genome.fa.s12907.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012907.1 Corchorus capsularis cultivar CVL-1 contig12928, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96549

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7068--7092	10	2.5	10	100	0	50	24	8	20	48	1.76
8998--9036	15	2.5	15	87	4	51	84	2	7	5	0.84
9278--9312	12	2.8	13	86	4	54	54	8	14	22	1.67
14667--14720	28	1.9	28	88	7	83	48	7	9	35	1.63
16013--16037	10	2.5	10	100	0	50	24	8	20	48	1.76
21529--22157	136	4.5	136	78	7	528	24	29	26	18	1.98
22236--22273	16	2.4	16	95	0	67	23	18	47	10	1.79
22408--22537	39	3.3	38	78	6	125	19	31	26	23	1.98
22519--22702	77	2.4	76	81	6	210	20	32	28	18	1.96
27333--27394	3	20.7	3	96	0	115	0	32	0	67	0.91
28067--28100	12	2.8	13	86	13	54	35	5	14	44	1.70
28051--28107	29	2.0	28	86	10	80	33	8	14	43	1.76
28209--28260	21	2.5	21	87	0	77	32	5	9	51	1.58
29458--29489	13	2.4	14	85	15	50	53	12	6	28	1.62
30764--30799	19	1.9	18	88	5	54	33	22	2	41	1.68
30963--31001	20	1.9	21	84	5	53	56	2	20	20	1.54
32311--32353	10	3.7	12	81	15	54	72	6	6	13	1.27
32309--32353	23	2.0	23	91	4	74	71	6	8	13	1.31
40752--40787	19	1.9	18	88	5	54	33	22	2	41	1.68
40951--40989	20	1.9	21	84	5	53	56	2	20	20	1.54
46046--46079	16	2.2	16	89	5	52	29	2	8	58	1.43
56427--56461	18	1.9	18	88	0	52	74	14	0	11	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61127--61177	14	3.6	14	94	5	86	37	9	5	47	1.61
61205--61246	14	3.0	14	82	6	50	33	9	9	47	1.68
61115--61299	67	2.8	65	82	7	234	35	9	13	41	1.76
62885--62915	16	1.9	16	93	0	53	25	29	3	41	1.71
63051--63131	8	10.5	8	74	12	71	28	20	1	49	1.57
63043--63110	16	4.4	16	66	17	54	30	17	0	51	1.46
63051--63132	24	3.5	24	77	9	80	29	20	1	48	1.57
63092--63145	24	2.2	24	83	0	63	31	22	3	42	1.71
63141--63273	58	2.3	58	79	8	153	21	25	10	42	1.84
63267--63531	22	11.8	22	68	15	116	27	21	6	45	1.76
63389--64017	36	17.0	36	68	17	162	29	21	5	42	1.76
63471--63557	22	4.0	22	79	13	81	32	19	4	43	1.71
63593--63640	16	3.0	16	90	0	69	29	25	4	41	1.74
63665--64200	8	71.8	8	65	21	113	29	21	4	45	1.70
63721--63978	22	11.8	22	70	16	90	31	23	3	41	1.71
63668--63832	59	2.9	57	84	9	194	30	21	4	43	1.73
63763--64082	14	22.5	14	72	17	184	30	22	3	44	1.68
63742--64082	60	5.3	61	72	21	186	29	22	3	43	1.70
63884--64030	60	2.5	59	92	3	242	29	21	3	44	1.68
63966--64082	22	5.3	22	80	6	128	29	21	3	46	1.68
63877--64196	16	20.9	16	71	16	161	28	20	4	46	1.69
67835--67869	11	3.2	11	91	0	61	42	2	8	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67820--67864	15	3.3	15	73	23	53	44	4	4	46	1.43
82508--84259	601	2.9	602	96	0	3202	32	12	21	33	1.90
84188--84292	33	3.2	33	81	5	122	23	10	20	45	1.81
84240--84328	33	2.7	33	80	11	94	26	10	21	41	1.85
87480--87565	16	5.4	16	79	8	104	16	10	33	39	1.83
87458--87565	32	3.4	32	89	2	173	14	10	36	38	1.80
87713--87834	16	7.6	16	79	0	127	4	12	31	51	1.60
87713--87834	32	3.8	32	95	0	208	4	12	31	51	1.60
87715--87849	64	2.1	64	86	2	191	6	12	33	47	1.68
88766--88822	30	1.9	30	85	7	80	33	17	7	42	1.76
91720--92426	240	3.0	240	99	0	1389	25	20	14	39	1.90
94489--94540	22	2.4	22	100	0	104	51	15	13	19	1.75

Tables:   1

The End!