Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001291.1 Corchorus capsularis cultivar CVL-1 contig01291, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 679

Length: 1132
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33


Found at i:692 original size:11 final size:11

Alignment explanation


    Indices: 678--715  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

        668 ATTCATAACA

                       
        678 AATTTATAATT
          1 AATTTATAATT

                       
        689 AATTTATAATT
          1 AATTTATAATT

                        
        700 -ATTTGATAATT
          1 AATTT-ATAATT

            *    
        711 TATTT
          1 AATTT

        716 TATATAGGGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  10    4  0.16
  11   17  0.68
  12    4  0.16

ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58


Consensus pattern (11 bp):   
AATTTATAATT
Done.