Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012913.1 Corchorus capsularis cultivar CVL-1 contig12934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35965

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1683--1717
3
11.7
3
100
0
70
34
0
0
65
0.93
4986--5010
12
2.1
12
100
0
50
8
32
20
40
1.81
5021--5056
19
1.9
18
94
5
63
25
0
19
55
1.43
5051--5098
21
2.5
18
78
21
53
25
8
6
60
1.49
5511--6008
120
4.2
119
85
7
552
29
16
13
40
1.86
5410--6008
119
5.0
120
83
7
584
30
17
12
39
1.86
5511--6008
239
2.1
237
83
8
602
29
16
13
40
1.86
12089--12115
13
2.1
13
100
0
54
33
22
22
22
1.97
16979--17022
1
44.0
1
95
0
79
0
2
0
97
0.16
16979--17026
20
2.5
20
96
3
89
0
4
0
95
0.25
16980--17033
24
2.2
24
93
0
90
1
5
0
92
0.44
20283--20325
18
2.3
18
88
4
59
9
13
0
76
1.01
20296--20326
12
2.5
12
94
5
53
6
9
0
83
0.79
20919--20954
18
2.0
18
100
0
72
22
27
5
44
1.75
20921--20964
18
2.3
18
88
7
61
22
25
4
47
1.70
35504--35564
27
2.3
27
82
0
77
13
9
26
50
1.72

Tables:   1

The End!