genome.fa.s12916.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012916.1 Corchorus capsularis cultivar CVL-1 contig12937, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48575

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501--557	16	3.4	16	69	21	53	49	10	19	21	1.78
499--569	35	2.1	35	94	5	128	53	11	16	18	1.72
1495--1584	26	3.7	26	64	29	70	57	6	22	13	1.59
1673--1892	22	10.0	22	67	17	93	54	5	20	20	1.63
1807--2193	43	9.3	42	73	14	204	56	6	18	19	1.62
1905--1937	14	2.4	14	94	0	57	54	6	18	21	1.64
1881--1959	36	2.3	35	86	4	106	55	6	17	20	1.63
1919--2193	44	6.5	42	75	14	226	56	6	18	19	1.63
1919--2193	65	4.3	64	77	14	282	56	6	18	19	1.63
1926--2257	15	23.0	14	65	15	54	57	5	19	17	1.58
1919--2109	22	8.7	22	80	10	212	54	4	19	20	1.61
2101--2193	22	4.3	22	79	5	100	59	8	17	15	1.60
2162--2302	68	2.1	69	85	6	189	63	2	19	14	1.43
1926--2257	7	46.0	7	64	13	75	57	5	19	17	1.58
2162--2302	35	4.1	35	83	6	164	63	2	19	14	1.43
2181--2317	68	2.0	70	84	8	183	62	2	21	13	1.42
2188--2329	35	4.1	35	85	6	112	60	3	20	15	1.49
4643--4689	19	2.5	20	75	10	53	46	6	12	34	1.67
5215--5250	14	2.6	14	87	12	56	36	8	19	36	1.82
8497--8591	27	3.4	27	85	2	109	15	12	26	45	1.82
8698--8742	23	2.0	23	90	0	72	24	13	17	44	1.85
11536--11576	21	2.0	22	90	9	68	21	0	48	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12196--12252	12	5.1	11	77	10	53	75	1	19	3	1.04
13137--13576	22	20.5	21	71	15	255	54	6	19	19	1.64
13272--13564	43	7.0	42	77	15	252	55	6	18	18	1.64
13272--13576	85	3.6	85	75	16	269	56	6	19	18	1.63
13471--13503	15	2.2	15	94	0	57	54	9	15	21	1.68
13215--13496	43	6.4	43	80	11	222	53	6	20	19	1.66
13457--13529	36	2.0	37	89	2	112	56	9	16	17	1.66
13567--13646	21	3.6	21	72	21	72	62	1	22	13	1.38
13564--13658	47	2.2	40	74	22	109	62	1	22	14	1.38
13604--13696	33	2.7	34	78	8	91	61	2	21	15	1.44
13765--13816	21	2.5	21	90	6	79	55	5	13	25	1.60
15337--15599	110	2.4	106	82	10	295	41	11	6	41	1.66
15371--15599	110	2.1	106	88	5	327	41	11	5	41	1.64
20254--20340	36	2.6	35	78	14	103	52	9	18	19	1.71
20278--20373	30	3.1	30	84	6	120	52	10	15	21	1.73
20407--20639	22	11.2	21	78	14	182	51	5	19	23	1.66
20556--20584	14	2.1	14	93	6	51	55	3	20	20	1.58
20404--20681	104	2.8	101	80	10	293	52	5	19	22	1.66
20622--20671	7	7.1	7	80	13	50	54	2	26	18	1.54
20648--20703	29	1.9	29	82	13	71	55	5	23	16	1.61
20588--20768	36	5.1	35	85	4	220	54	4	20	19	1.61
20731--20824	22	4.2	22	75	13	84	57	5	17	20	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20546--20768	36	6.1	36	81	6	211	54	4	20	20	1.63
21674--21819	60	2.4	60	89	0	220	30	8	17	43	1.79
21726--21819	31	3.1	30	67	11	84	30	8	18	42	1.80
25000--25048	16	3.1	16	87	0	80	22	6	22	48	1.72
25178--25215	18	2.1	18	100	0	76	5	21	15	57	1.57
38283--38361	39	2.0	39	97	0	149	18	8	15	56	1.64
41828--42251	66	6.4	64	82	6	404	23	20	16	40	1.91
45171--45203	2	16.5	2	100	0	66	51	0	0	48	1.00
46780--46813	2	17.0	2	93	0	59	50	2	0	47	1.16

Tables:   1

The End!