genome.fa.s12917.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012917.1 Corchorus capsularis cultivar CVL-1 contig12938, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76167

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2185--2367	54	3.4	54	85	4	246	37	26	15	20	1.93
2322--2423	30	3.4	30	77	10	109	39	30	12	17	1.87
5017--5050	16	2.2	16	89	5	52	58	8	2	29	1.43
6332--6367	19	1.9	18	88	5	54	33	22	2	41	1.68
6715--6771	30	1.9	30	96	0	105	33	22	26	17	1.96
14380--14439	30	2.0	30	90	0	93	36	21	23	18	1.95
18802--18844	2	21.0	2	95	4	77	48	0	2	48	1.14
19963--20047	43	2.0	43	86	4	118	31	10	8	49	1.67
20446--20532	43	2.0	43	84	4	113	31	12	8	48	1.70
20832--20878	18	2.5	19	80	13	53	31	19	10	38	1.86
22707--22739	6	5.5	6	100	0	66	33	15	0	51	1.43
26908--27084	50	3.6	50	90	1	275	36	18	27	18	1.94
26909--27393	95	5.0	95	79	6	393	33	16	27	22	1.95
26899--27393	49	10.2	48	83	4	419	33	15	27	22	1.95
27388--28015	40	15.8	40	77	9	545	36	19	29	14	1.92
27388--28015	79	7.9	78	75	10	490	36	19	29	14	1.92
27792--27965	39	4.4	40	76	6	122	36	20	24	18	1.95
27989--28123	48	2.8	48	82	1	173	36	17	28	17	1.93
28621--28939	50	6.4	49	81	9	292	33	16	5	44	1.72
28939--29041	51	2.0	51	86	1	145	45	12	0	40	1.49
29014--29071	21	2.8	21	81	2	73	41	13	1	43	1.55
28963--29109	72	2.0	72	90	0	231	44	11	2	41	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41943--41977	16	2.1	16	89	5	52	22	14	2	60	1.48
43599--43636	19	2.1	18	90	5	58	28	21	2	47	1.64
52117--52152	18	2.1	17	94	5	63	63	8	16	11	1.49
52739--52774	19	1.9	18	88	5	54	33	22	2	41	1.68
60964--61000	19	2.0	18	89	5	56	24	21	13	40	1.89
70672--70700	13	2.1	14	93	6	51	20	20	10	48	1.79
72408--72448	15	2.7	15	88	0	55	14	7	46	31	1.72
74788--75069	55	5.2	53	73	16	254	30	18	17	34	1.94
74784--75069	109	2.6	110	96	1	520	30	18	17	34	1.93
75350--75398	21	2.3	22	83	13	59	40	12	14	32	1.83
76015--76167	50	3.1	50	91	1	227	40	19	26	13	1.89

Tables:   1

The End!