genome.fa.s12918.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012918.1 Corchorus capsularis cultivar CVL-1 contig12939, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59246

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--603	50	12.3	49	81	5	583	35	17	29	17	1.93
629--746	47	2.7	41	75	20	130	41	16	27	14	1.87
1437--1613	50	3.5	51	81	9	143	38	17	3	40	1.68
1507--1622	51	2.3	50	84	8	155	39	15	2	42	1.61
1542--1583	20	2.0	21	86	4	59	35	14	2	47	1.57
5129--6063	50	18.7	50	81	5	879	36	18	29	16	1.92
5129--6063	99	9.3	100	80	5	915	36	18	29	16	1.92
5129--6072	98	9.4	97	79	7	761	36	18	29	16	1.92
5519--6068	148	3.7	147	83	3	617	35	17	30	16	1.92
6067--6158	41	2.2	41	79	12	116	38	17	29	15	1.90
6892--7209	51	6.3	51	73	11	165	36	16	5	41	1.73
7099--7236	51	2.8	51	82	7	158	39	15	3	40	1.65
15721--15780	31	1.9	31	83	6	77	38	26	6	28	1.81
16482--16708	38	5.9	38	78	3	222	30	20	21	27	1.98
16718--17050	44	7.6	44	91	2	530	24	21	24	30	1.99
17296--17456	80	2.0	80	95	0	286	25	15	20	38	1.92
17622--17674	25	2.1	25	85	0	70	28	20	5	45	1.74
25264--25331	34	2.1	34	83	5	86	30	2	10	55	1.48
25355--25401	24	2.0	24	83	8	60	14	14	4	65	1.41
26918--26953	19	1.9	18	88	5	54	41	2	22	33	1.68
30888--31095	49	3.9	54	77	9	196	45	5	21	27	1.74
31098--31163	31	2.4	25	70	27	60	59	3	21	16	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31187--31219	14	2.3	15	94	5	59	51	0	33	15	1.43
31109--31555	32	13.3	32	79	10	287	55	4	23	16	1.59
31239--31330	16	5.5	16	69	23	73	55	3	23	17	1.57
31287--31330	14	2.9	15	86	6	54	59	2	22	15	1.48
31269--31350	20	4.2	20	73	20	75	58	2	21	17	1.50
31232--31282	15	3.3	15	76	10	57	56	1	25	15	1.50
31109--31465	175	2.1	172	82	8	444	55	3	23	17	1.59
31482--31539	17	3.5	17	74	9	66	55	6	20	17	1.65
31109--31555	175	2.7	171	77	12	428	55	4	23	16	1.59
31542--31656	9	12.7	9	88	1	176	58	0	30	11	1.33
31539--31656	27	4.3	27	93	2	200	58	0	30	11	1.33
31539--31656	55	2.2	55	93	1	193	58	0	30	11	1.33
31653--31699	19	2.5	19	82	0	58	48	6	14	29	1.69
36487--36961	51	9.4	50	78	3	477	41	5	16	37	1.71
36496--36958	101	4.6	100	91	1	721	40	5	16	37	1.71
37638--37860	55	4.1	55	95	1	394	50	7	16	25	1.72
38095--38434	43	7.7	42	77	11	274	55	7	19	17	1.65
38076--38449	21	17.0	22	73	13	240	54	6	19	18	1.65
38141--38233	14	6.7	13	70	11	51	56	4	19	19	1.57
38155--38209	28	2.0	27	82	10	67	58	5	16	20	1.58
38313--38368	15	3.9	15	71	17	55	57	7	19	16	1.62
44772--44868	48	2.0	48	91	0	158	50	18	6	24	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50841--50906	32	2.1	32	83	11	82	36	18	19	25	1.94

Tables:   1

The End!