Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012920.1 Corchorus capsularis cultivar CVL-1 contig12941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59515

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1216--1368
53
2.9
53
85
8
195
37
30
14
17
1.90
1323--1424
30
3.4
29
80
10
107
40
30
10
18
1.85
10327--10359
15
2.2
15
94
0
57
24
39
24
12
1.89
13685--13818
53
2.5
53
88
8
202
37
29
14
18
1.90
13773--13874
30
3.4
30
80
10
118
40
28
12
18
1.87
13976--14261
144
2.0
144
99
0
563
33
27
16
21
1.95
18900--18931
11
2.9
11
90
0
55
37
0
18
43
1.51
20292--20327
19
1.9
18
88
5
54
19
13
11
55
1.68
22522--22546
1
25.0
1
100
0
50
0
0
0
100
0.00
22723--22766
21
2.2
19
84
15
54
36
4
38
20
1.73
29916--29975
30
2.0
30
93
0
102
31
11
36
20
1.88
30070--30139
34
2.1
33
91
2
113
48
22
7
21
1.74
30300--30335
15
2.3
17
81
18
51
66
11
11
11
1.45
40739--40777
19
2.1
19
90
4
62
20
15
7
56
1.63
40732--40779
18
2.8
17
81
6
60
25
14
8
52
1.69
46845--46904
30
2.0
30
83
6
77
43
3
16
36
1.65
48679--49073
156
2.5
155
79
8
419
31
15
18
33
1.93
49389--49464
28
2.7
28
91
0
125
30
17
27
25
1.97
55460--55499
6
6.7
6
88
11
64
32
0
15
52
1.43
57723--57800
20
3.9
20
94
0
138
32
8
17
41
1.81
57723--57800
40
2.0
40
100
0
156
32
8
17
41
1.81

Tables:   1

The End!