Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012921.1 Corchorus capsularis cultivar CVL-1 contig12942, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19532

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5529--5616
8
10.8
8
72
18
65
73
1
23
1
0.96
5532--5616
17
4.7
19
73
25
60
72
1
24
1
0.98
5542--5606
33
2.0
34
84
6
89
75
1
21
1
0.97
5529--5666
43
3.2
42
77
13
138
73
1
21
3
1.06
5532--5616
13
6.1
13
73
23
66
72
1
24
1
0.98
5550--5664
13
8.2
13
70
23
65
73
0
20
4
1.05
5681--5819
48
2.9
48
87
0
188
43
4
15
36
1.67
6896--7145
121
2.0
122
98
1
484
33
15
12
39
1.84
9697--9730
14
2.4
14
85
0
50
44
5
14
35
1.70
10247--10299
10
5.6
9
77
20
54
83
0
13
3
0.79
10254--10313
12
4.8
12
76
15
59
78
0
16
5
0.92
10250--10299
13
3.8
13
75
17
50
82
0
14
4
0.82
10248--10299
19
2.7
18
80
13
59
82
0
13
3
0.80
10247--10313
21
3.4
19
73
24
59
79
0
16
4
0.90
10794--10868
21
3.3
22
71
20
64
22
21
5
50
1.68
10875--11108
22
10.7
22
70
16
137
17
18
5
57
1.60
10843--10936
43
2.2
43
81
7
104
14
19
7
58
1.60
11340--11567
55
4.3
54
83
8
288
25
17
6
50
1.69
11419--11506
29
3.1
29
62
21
69
22
18
6
52
1.69
14989--15035
24
2.0
24
95
0
85
53
10
0
36
1.36
15788--15848
29
2.1
29
100
0
122
39
19
11
29
1.87
16091--16455
70
5.3
69
80
6
398
26
28
18
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16091--16455
138
2.6
139
90
1
554
26
28
18
26
1.98
16565--16701
47
2.9
47
92
0
211
20
24
18
35
1.95
17588--17626
20
2.0
20
94
0
69
30
10
17
41
1.83
18172--18210
19
2.1
19
100
0
78
38
5
25
30
1.78

Tables:   1

The End!