Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012922.1 Corchorus capsularis cultivar CVL-1 contig12943, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37445

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3360--3451
16
5.8
16
89
1
132
6
15
36
41
1.73
4205--4286
6
13.8
6
75
21
75
3
17
50
29
1.63
4223--4254
16
2.0
16
93
0
55
3
18
53
25
1.59
4208--4251
22
2.0
23
95
4
81
2
18
50
29
1.59
5531--5604
29
2.6
29
84
0
112
20
14
24
40
1.90
7943--7972
14
2.1
14
93
0
51
43
6
0
50
1.28
7942--7975
14
2.5
13
86
9
50
50
5
0
44
1.26
14136--14190
21
2.6
21
83
11
60
56
7
3
32
1.44
14155--14226
31
2.3
33
74
13
80
58
9
5
26
1.52
14391--14449
10
5.5
11
75
13
52
1
18
50
28
1.56
14391--14449
16
3.7
16
75
4
57
1
18
50
28
1.56
20944--20997
14
3.9
14
80
0
54
42
9
5
42
1.60
20951--20998
21
2.3
21
88
0
69
41
10
4
43
1.58
24712--24895
75
2.5
75
91
1
289
12
27
33
26
1.92
32182--32210
13
2.1
14
93
6
51
65
6
3
24
1.33
33045--33210
83
2.0
83
96
0
305
21
16
27
34
1.94
33604--33647
22
2.0
22
100
0
88
36
13
4
45
1.64
34092--34123
16
2.0
16
93
0
55
28
6
21
43
1.77
37005--37043
21
1.9
20
84
5
51
15
51
12
20
1.76

Tables:   1

The End!