Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012935.1 Corchorus capsularis cultivar CVL-1 contig12956, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1839

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12--115
50
2.1
49
85
5
138
37
25
15
22
1.93
251--352
49
2.1
49
92
0
168
35
25
17
21
1.95
1--712
120
5.9
120
89
2
1056
38
23
15
22
1.92
498--592
49
1.9
49
89
0
145
33
23
16
26
1.96
616--810
49
4.0
49
88
1
293
37
23
16
21
1.93
616--810
98
2.0
98
92
0
327
37
23
16
21
1.93
832--927
48
2.0
49
91
2
158
38
22
17
20
1.93
709--1524
120
6.4
120
84
8
830
38
22
17
21
1.93
948--1050
49
2.1
50
89
5
156
38
23
16
21
1.92
881--1781
191
4.6
189
80
9
1029
38
21
18
21
1.94
998--1404
71
5.8
70
87
1
580
38
22
18
20
1.94
1003--1404
141
2.8
141
94
0
696
38
22
18
20
1.94
1352--1453
49
2.1
49
92
0
168
37
24
17
20
1.94
1401--1595
71
2.7
71
91
0
318
39
21
16
22
1.92
1475--1714
120
2.0
119
92
0
399
36
21
18
23
1.95
1543--1644
49
2.1
49
92
0
168
35
23
18
22
1.96
1593--1839
70
3.5
70
84
4
329
37
21
19
21
1.95

Tables:   1

The End!