Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012936.1 Corchorus capsularis cultivar CVL-1 contig12957, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8029

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3218--3266
14
3.6
14
81
10
57
81
0
12
6
0.86
4431--4547
59
2.0
59
98
0
225
24
19
6
48
1.73
5500--5587
32
2.8
32
85
0
122
5
21
36
36
1.77
5508--5587
16
5.0
16
87
0
106
5
22
37
35
1.76
5508--5602
32
3.0
32
78
9
104
5
23
37
33
1.77
5508--5602
48
2.0
48
81
4
111
5
23
37
33
1.77
6049--6096
21
2.3
21
85
0
69
56
4
10
29
1.52
6204--6314
16
6.9
16
82
8
127
9
19
38
32
1.83
6205--6314
32
3.4
32
90
5
152
9
20
39
31
1.83
6204--6321
48
2.5
48
83
8
150
9
20
38
31
1.84
7993--8029
2
18.5
2
100
0
74
48
0
0
51
1.00

Tables:   1

The End!