Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012941.1 Corchorus capsularis cultivar CVL-1 contig12962, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17627

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1672--1698
9
3.0
9
100
0
54
22
11
33
33
1.89
2960--3336
46
8.3
46
79
10
319
16
24
19
39
1.92
3063--3819
41
18.2
41
75
11
481
15
26
18
38
1.91
2960--3329
181
2.0
181
93
1
634
16
25
19
38
1.92
3031--3336
90
3.4
90
76
8
361
16
25
19
39
1.92
3244--3834
203
2.9
200
79
8
608
15
27
18
38
1.91
4381--4411
13
2.4
13
94
0
53
0
16
0
83
0.64
5123--5164
14
3.2
13
77
16
50
38
19
7
35
1.79
5628--5778
75
2.0
76
90
1
241
29
20
10
39
1.86
6845--6891
21
2.3
20
78
7
51
65
8
8
17
1.44
11266--11306
12
3.3
13
76
10
50
53
9
2
34
1.47
12674--12745
26
2.7
26
85
12
94
22
15
26
36
1.93
12676--12745
27
2.7
25
86
10
88
21
15
25
37
1.93
17006--17627
41
14.8
41
79
7
533
13
27
20
37
1.91
17216--17627
40
9.8
40
76
10
337
14
28
20
36
1.92

Tables:   1

The End!