genome.fa.s12944.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012944.1 Corchorus capsularis cultivar CVL-1 contig12965, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32138

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3133--3173	13	3.2	13	92	0	64	12	17	43	26	1.84
12188--12301	37	3.1	36	76	8	131	29	28	17	23	1.97
12514--12618	39	2.7	39	89	7	153	35	20	20	24	1.96
12631--12758	38	3.4	38	79	4	136	30	22	17	29	1.96
12801--12994	34	5.7	34	84	11	249	29	23	4	43	1.72
12815--12975	15	9.7	15	74	20	135	31	22	3	42	1.71
12816--13004	17	11.2	16	75	17	118	29	23	4	42	1.73
12965--13019	19	2.9	19	97	0	101	27	25	5	41	1.77
13409--13481	26	2.7	27	85	4	103	19	15	24	41	1.89
17742--18121	41	9.0	41	73	11	178	14	26	20	38	1.91
18005--18118	39	2.8	41	88	2	160	13	34	21	31	1.91
17890--18130	81	2.9	82	81	7	274	16	27	19	36	1.93
17890--18117	80	2.8	81	82	6	246	15	28	20	35	1.93
17890--18134	41	5.9	41	77	5	217	15	26	20	37	1.93
18916--19012	30	3.1	30	87	11	142	9	27	40	22	1.85
18945--18999	10	5.1	11	72	10	51	7	23	43	25	1.79
18916--19012	33	3.1	32	88	11	141	9	27	40	22	1.85
19307--19502	49	4.3	46	81	9	199	13	23	22	40	1.89
19305--19502	46	4.3	46	81	9	221	13	23	22	40	1.89
19424--19502	41	1.9	41	86	0	113	11	25	22	40	1.87
19598--19890	51	5.9	50	84	3	324	17	25	18	38	1.92
19589--19893	101	3.1	97	77	9	312	16	25	18	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20533--20565	16	2.0	17	88	5	50	57	27	0	15	1.38
25900--25976	28	2.7	29	91	4	129	29	16	24	28	1.97
27024--27057	17	1.9	18	88	5	52	58	26	0	14	1.36
29921--30033	41	2.8	41	85	8	142	29	16	11	42	1.83
30218--30246	13	2.1	14	93	6	51	48	10	20	20	1.79
31055--31086	2	16.0	2	100	0	64	50	0	0	50	1.00
32108--32138	1	31.0	1	100	0	62	0	0	0	100	0.00

Tables:   1

The End!