Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012948.1 Corchorus capsularis cultivar CVL-1 contig12969, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24313

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
710--820
41
2.7
41
85
9
147
32
13
9
44
1.77
4379--4414
2
18.5
2
88
5
56
50
2
0
47
1.15
6060--6134
24
3.1
24
75
7
89
22
17
32
28
1.96
16807--16833
6
4.5
6
100
0
54
55
14
0
29
1.40
19666--19697
15
2.1
16
94
5
57
81
6
6
6
0.99
22429--22472
21
2.0
22
86
4
63
20
22
4
52
1.65
22441--22566
21
6.3
21
69
14
97
22
22
5
50
1.70
22494--22594
35
2.9
34
86
2
130
22
21
6
48
1.74
22477--22635
56
2.8
55
75
9
151
22
22
6
48
1.74
22546--22581
14
2.5
15
90
9
65
19
25
5
50
1.69
22531--22572
21
2.0
21
81
9
50
23
19
7
50
1.72
22564--22640
21
3.6
21
78
5
66
22
22
6
49
1.72
22604--22706
22
4.5
22
68
21
59
21
15
4
58
1.56
22672--22722
22
2.4
21
73
20
52
17
15
3
62
1.47
22929--22984
16
3.4
16
70
20
53
23
16
7
53
1.67

Tables:   1

The End!