Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012949.1 Corchorus capsularis cultivar CVL-1 contig12970, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10913
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:4179 original size:5 final size:5

Alignment explanation


    Indices: 4169--4203  Score: 70
    Period size: 5  Copynumber: 7.0  Consensus size: 5

       4159 TTTTCTTGCT

                                                     
       4169 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
          1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA

       4204 AATATTAATT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   30  1.00

ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20


Consensus pattern (5 bp):   
TAAAA

Found at i:5587 original size:19 final size:18

Alignment explanation


    Indices: 5563--5598  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       5553 TGAAGATTTC

                               
       5563 TTGAAGATAATTTGAAGAT
          1 TTGAAGATAA-TTGAAGAT

                    *        
       5582 TTGAAGATCATTGAAGA
          1 TTGAAGATAATTGAAGA

       5599 ATTATTTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33


Consensus pattern (18 bp):   
TTGAAGATAATTGAAGAT
Done.