Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001295.1 Corchorus capsularis cultivar CVL-1 contig01295, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 750

Length: 1250
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33


Found at i:397 original size:5 final size:5

Alignment explanation


    Indices: 387--416  Score: 60
    Period size: 5  Copynumber: 6.0  Consensus size: 5

        377 TCAAGTTTTT

                                               
        387 AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG
          1 AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG

        417 GGAGGGAAGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   25  1.00

ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00


Consensus pattern (5 bp):   
AAAGG

Done.