Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012952.1 Corchorus capsularis cultivar CVL-1 contig12973, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6643

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2026--2186
53
3.0
54
80
5
220
39
3
14
41
1.64
1996--2186
105
1.8
104
91
1
319
40
4
15
39
1.66
2018--2186
52
3.2
52
80
5
225
40
3
15
40
1.64
2693--2814
35
3.4
35
88
4
165
54
2
23
18
1.55
2701--2769
28
2.4
29
76
7
70
59
1
21
17
1.45
2701--2820
15
8.4
14
67
15
50
56
2
23
17
1.53
2787--3010
22
10.0
22
72
12
145
51
5
21
20
1.67
2801--2897
49
1.9
50
83
8
126
55
4
18
21
1.59
2869--2947
21
3.7
21
82
1
95
50
7
20
21
1.72
2972--3118
35
4.1
36
79
5
165
50
8
20
20
1.74
3079--3169
21
4.3
21
77
2
94
51
7
20
19
1.71
3079--3181
42
2.5
41
77
4
116
49
7
22
20
1.74
3243--3289
13
3.5
13
72
16
51
61
0
25
12
1.31
3234--3296
27
2.3
28
83
5
94
61
0
20
17
1.34
6192--6228
19
2.0
18
89
5
56
40
13
21
24
1.89

Tables:   1

The End!