Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012959.1 Corchorus capsularis cultivar CVL-1 contig12980, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12496

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1674--1749
27
2.8
27
89
0
107
17
19
25
38
1.93
4274--4668
51
7.8
50
75
6
296
41
4
16
38
1.68
4274--4618
101
3.4
101
87
2
480
42
3
16
37
1.65
4274--4668
203
2.0
201
84
5
519
41
4
16
38
1.68
5274--5612
54
6.2
54
84
2
435
43
10
22
23
1.83
5274--5612
109
3.1
108
90
2
525
43
10
22
23
1.83
5273--5587
163
1.9
164
88
0
470
43
10
22
23
1.84
5761--5850
35
2.6
35
87
0
135
54
2
25
17
1.55
5824--6084
22
11.9
22
76
16
229
54
4
21
19
1.63
5832--5934
49
2.0
51
83
9
131
57
3
18
20
1.56
5884--6084
42
4.7
43
80
10
184
54
5
20
19
1.64
6043--6114
30
2.4
29
86
6
92
59
2
18
19
1.49
6028--6130
52
2.0
51
81
5
118
58
3
17
20
1.54
6080--6172
21
4.3
21
79
6
89
53
3
18
24
1.59
6103--6184
42
2.0
42
83
9
105
47
3
21
26
1.67
8102--8127
10
2.6
10
100
0
52
50
19
7
23
1.73
9386--9445
25
2.7
23
83
16
81
46
6
15
31
1.71
9396--9448
25
2.1
25
92
0
88
35
7
15
41
1.75

Tables:   1

The End!