Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012961.1 Corchorus capsularis cultivar CVL-1 contig12982, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56289

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
839--872
14
2.5
14
90
4
52
35
0
2
61
1.11
863--905
22
2.0
21
86
4
59
25
9
0
65
1.22
966--1015
17
2.9
17
90
0
82
34
8
2
56
1.40
1064--1204
4
35.5
4
71
8
56
26
6
2
63
1.32
1065--1202
12
11.9
12
68
7
70
27
6
2
63
1.34
1129--1180
18
2.7
20
88
5
72
21
7
1
69
1.24
14832--14859
1
28.0
1
100
0
56
100
0
0
0
0.00
22836--22894
21
2.8
21
82
7
57
44
5
6
44
1.52
23101--23393
155
1.9
152
80
4
329
37
13
13
35
1.85
23486--23531
21
2.1
22
84
4
58
45
6
0
47
1.28
23748--23802
21
2.5
22
88
2
76
47
1
1
49
1.23
23748--23812
21
3.0
21
84
2
67
46
4
3
46
1.39
23248--24299
513
2.1
511
85
5
1428
36
12
12
38
1.82
24902--24966
21
3.0
21
82
6
60
46
6
4
43
1.49
24921--24968
21
2.3
21
88
0
69
43
6
6
43
1.54
26294--26360
21
3.0
21
80
6
71
43
5
7
43
1.57
27407--27452
21
2.2
21
84
0
56
45
4
6
43
1.49
36948--36997
25
2.0
25
96
0
91
26
24
28
22
1.99
37505--37559
21
2.5
22
82
2
58
43
1
5
49
1.36
37531--37574
21
2.1
21
87
8
63
40
6
11
40
1.68
38519--38559
21
2.0
21
85
0
55
36
7
9
46
1.65
37042--39558
507
5.0
499
79
6
2531
35
13
13
36
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39010--39054
21
2.1
22
87
4
65
44
4
4
46
1.43
39010--39079
21
3.3
21
78
9
63
40
5
7
47
1.55
39182--39258
38
2.0
39
82
7
95
35
15
12
36
1.86
39496--39539
22
2.1
22
83
8
56
43
2
6
47
1.42
40296--40338
21
2.0
21
81
0
50
44
2
6
46
1.43
39022--40871
628
2.9
630
83
5
2232
36
13
13
36
1.84
46090--46127
3
12.7
3
94
0
67
71
0
28
0
0.87
49071--49163
16
5.8
16
79
11
73
9
10
43
36
1.73
49094--49182
16
5.6
16
71
10
65
13
8
39
38
1.76
49088--49194
32
3.3
32
88
0
151
11
11
40
37
1.77

Tables:   1

The End!