genome.fa.s12966.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012966.1 Corchorus capsularis cultivar CVL-1 contig12987, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32499

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75--121	13	3.5	13	75	16	51	63	0	23	12	1.28
73--136	27	2.2	29	78	13	78	64	0	20	15	1.30
2241--2583	21	17.2	20	67	20	159	20	21	6	51	1.70
2305--2447	71	2.0	71	95	0	259	21	20	6	51	1.71
2338--2569	44	5.8	43	78	11	148	20	19	6	53	1.68
2382--2569	108	1.8	100	83	13	247	20	19	6	53	1.67
2557--2683	35	3.6	34	82	3	137	18	24	3	52	1.62
2658--2697	14	2.9	14	88	0	62	25	22	0	52	1.47
2691--2730	21	1.9	21	84	0	53	17	22	2	57	1.52
2747--2772	8	3.2	8	100	0	52	23	23	0	53	1.46
2777--3010	74	3.2	72	80	9	262	26	18	6	49	1.71
2841--3010	34	4.7	37	72	19	137	25	16	6	51	1.68
2896--3133	124	1.9	122	84	9	311	26	18	5	49	1.70
2968--3076	55	2.0	53	92	3	182	24	18	7	49	1.73
3020--3452	70	6.1	71	74	15	317	27	18	5	48	1.71
2982--3098	55	2.1	55	81	6	130	28	19	6	45	1.76
3038--3328	78	3.9	74	74	15	215	27	19	5	47	1.71
3175--3317	38	3.8	36	81	7	144	27	19	6	46	1.74
3266--3409	63	2.3	63	90	3	227	27	18	6	47	1.74
3282--3460	63	2.7	63	75	18	161	27	18	5	47	1.71
9797--9843	22	2.1	22	96	0	85	42	4	6	46	1.48
9797--9839	11	3.9	11	90	0	68	41	4	6	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11959--12077	33	3.7	32	82	5	141	10	35	39	14	1.81
11940--12039	32	3.1	32	82	4	130	12	33	40	15	1.83
11940--12096	65	2.4	64	81	9	158	11	35	37	15	1.83
12721--12746	6	4.3	6	100	0	52	19	65	15	0	1.27
20900--21052	77	2.0	79	93	2	265	23	17	18	39	1.92
21706--21769	6	10.7	6	72	12	51	20	1	1	76	0.95
21719--21756	15	2.5	15	88	12	60	18	0	0	81	0.69
32457--32496	1	40.0	1	94	0	71	2	0	0	97	0.17

Tables:   1

The End!