genome.fa.s12967.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012967.1 Corchorus capsularis cultivar CVL-1 contig12988, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119908

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1311--1413	43	2.4	44	82	8	122	40	11	8	38	1.73
1311--1496	22	8.5	22	70	15	86	36	13	9	40	1.76
1420--1497	21	3.6	21	76	13	70	29	14	10	46	1.77
1469--1521	22	2.4	22	77	0	61	24	13	9	52	1.69
3204--3233	1	30.0	1	100	0	60	0	0	0	100	0.00
4951--4976	2	13.0	2	100	0	52	50	0	0	50	1.00
6125--6157	2	16.5	2	100	0	66	51	0	0	48	1.00
7521--7547	11	2.5	11	100	0	54	14	0	0	85	0.61
14680--14742	21	3.0	21	75	9	74	46	11	17	25	1.81
15889--16050	79	2.1	79	95	0	288	30	20	17	30	1.96
16701--16964	35	7.6	35	86	4	347	30	23	17	28	1.97
16962--17249	55	5.2	55	77	8	260	34	21	15	28	1.94
16984--17249	109	2.4	111	81	8	306	33	22	15	28	1.95
19664--19714	26	2.0	25	81	14	59	37	11	5	45	1.65
19664--19722	29	2.1	27	82	14	68	38	10	6	44	1.65
19664--19722	14	4.3	13	81	14	66	38	10	6	44	1.65
22845--23126	35	8.0	35	79	7	246	38	17	7	36	1.78
22990--23032	21	2.0	21	95	0	77	39	13	0	46	1.44
22913--23067	56	2.9	54	88	3	233	38	16	5	38	1.73
23984--24018	14	2.5	14	90	0	52	0	37	0	62	0.95
25564--25602	19	2.1	18	85	4	51	30	20	5	43	1.73
30243--30328	45	1.9	44	88	6	129	24	46	20	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35216--35491	72	3.8	73	87	4	393	21	29	18	31	1.97
36260--36296	19	1.9	19	88	0	56	35	29	13	21	1.92
38104--38206	39	2.6	39	84	3	136	45	23	7	23	1.78
52395--52428	13	2.6	13	90	0	59	8	5	47	38	1.59
52739--52811	33	2.1	33	87	10	101	43	13	5	36	1.67
52872--52907	2	18.5	2	94	5	65	50	0	0	50	1.00
53033--53106	31	2.6	29	89	8	107	56	8	8	27	1.56
53170--53270	51	2.0	50	88	1	148	49	8	11	29	1.70
53850--53888	18	2.1	19	86	13	55	33	20	15	30	1.94
54286--54322	15	2.2	17	86	13	51	16	43	0	40	1.48
56659--56699	21	2.0	21	85	0	55	29	21	9	39	1.86
62218--62267	24	2.0	27	88	11	79	64	12	6	18	1.47
63211--63240	10	3.0	10	90	0	51	26	10	13	50	1.73
68593--68663	31	2.3	31	92	4	117	16	21	30	30	1.95
68723--68762	21	1.9	21	94	0	71	22	25	17	35	1.95
70195--70279	17	5.2	16	75	9	73	76	0	21	2	0.90
70207--70289	25	3.3	26	72	14	77	77	0	20	2	0.89
70215--70285	6	11.7	6	77	8	54	76	0	21	2	0.92
70209--70285	12	6.4	12	76	15	70	76	0	20	2	0.90
70212--70279	21	3.2	20	80	15	84	77	0	19	2	0.89
70206--70278	22	3.4	21	76	12	76	78	0	19	2	0.88
70925--70974	24	2.0	27	88	11	79	64	12	6	18	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72519--72558	20	2.0	19	90	9	62	65	12	5	17	1.44
74115--74181	21	3.2	21	71	0	71	34	26	11	26	1.91
78054--78109	24	2.3	24	93	0	103	17	21	41	19	1.91
92633--92833	68	3.1	67	82	13	249	25	19	6	48	1.74
92693--92828	59	2.3	59	91	1	211	25	19	5	48	1.71
92810--92869	9	6.7	9	92	0	102	11	35	0	53	1.38
92821--92875	18	3.2	16	90	7	58	12	34	0	52	1.40
92897--93602	53	13.2	53	88	3	982	25	18	9	46	1.78
93006--93094	29	3.2	29	64	20	82	29	15	7	47	1.74
93425--93602	62	3.0	62	81	14	241	23	18	10	47	1.80
93491--93593	52	2.0	53	96	1	190	26	18	11	43	1.84
93371--93602	115	2.0	115	89	1	358	23	18	10	47	1.79
97886--97924	15	2.6	15	95	0	69	10	0	79	10	0.94
98157--98197	3	13.7	3	100	0	82	34	0	0	65	0.93
108426--108461	18	1.9	19	88	5	56	69	8	11	11	1.37
108898--109173	101	2.7	101	93	2	448	26	17	17	37	1.93
118522--118626	33	3.2	32	81	5	129	24	9	20	45	1.80
118654--118793	33	4.2	33	94	0	226	28	8	18	44	1.79
119141--119198	30	1.9	30	89	6	91	32	17	27	22	1.96

Tables:   1

The End!