genome.fa.s12973.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012973.1 Corchorus capsularis cultivar CVL-1 contig12994, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51258

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1652--1700	22	2.2	22	82	7	64	79	0	14	6	0.91
1754--1802	13	3.7	13	78	13	55	44	8	12	34	1.71
1744--1787	14	3.2	14	83	6	54	45	11	13	29	1.79
2297--2337	13	3.2	13	83	13	50	78	0	19	2	0.87
2828--2869	21	2.0	21	95	0	75	19	30	33	16	1.94
2849--2948	33	3.1	33	84	4	123	20	41	29	10	1.84
2901--2987	33	2.6	32	80	10	95	19	45	24	10	1.81
3997--4021	10	2.5	10	100	0	50	84	0	0	16	0.63
9314--9354	21	2.0	21	90	0	64	19	26	34	19	1.96
9334--9440	33	3.2	33	81	5	110	20	40	28	11	1.87
9415--9477	33	1.9	33	93	0	108	20	44	25	9	1.82
10451--10497	12	3.8	13	86	8	62	85	0	14	0	0.61
12374--12513	22	6.4	22	68	12	81	27	29	23	20	1.99
12394--12471	23	3.4	23	79	10	106	28	28	21	21	1.99
12374--12474	45	2.2	45	96	0	184	26	28	22	21	1.99
12611--12850	69	3.5	69	81	6	279	26	25	18	28	1.98
12969--13111	47	3.0	47	88	2	207	20	24	19	35	1.95
17354--17402	21	2.3	22	83	13	59	42	12	12	32	1.79
19183--19514	167	2.0	167	98	0	646	25	21	28	25	1.99
21779--21818	20	2.0	21	90	5	64	67	0	10	22	1.20
25832--25904	33	2.2	33	82	4	85	19	24	19	36	1.94
33612--33651	20	2.0	21	85	5	55	65	2	12	20	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34608--34682	21	3.6	21	83	3	89	22	44	18	14	1.86
39608--39666	30	2.0	30	93	6	102	25	18	33	22	1.96
44494--44536	12	3.6	12	83	0	50	18	32	37	11	1.87
48465--48496	11	2.9	11	100	0	64	9	18	25	46	1.79
48931--49010	27	3.0	27	90	0	115	15	21	26	37	1.92
48942--49027	27	3.2	27	86	3	84	16	18	25	39	1.91

Tables:   1

The End!