Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012976.1 Corchorus capsularis cultivar CVL-1 contig12997, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18003

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
553--656
40
2.5
42
86
6
142
50
5
22
21
1.69
740--793
26
2.1
26
86
6
74
51
3
14
29
1.60
788--874
36
2.6
31
72
19
86
58
3
18
19
1.53
887--1025
56
2.5
56
84
3
163
55
4
17
22
1.60
958--1063
22
5.0
22
79
7
121
54
5
17
21
1.63
1043--1077
14
2.4
15
85
9
54
51
5
17
25
1.67
1101--1180
34
2.3
34
78
4
88
60
2
22
15
1.47
1155--1217
26
2.2
29
81
13
78
63
0
23
12
1.29
7094--7152
30
2.0
30
90
6
93
30
16
30
22
1.96
9049--9087
21
1.9
19
85
10
51
43
20
10
25
1.83
12103--12147
20
2.2
20
84
4
54
66
8
8
15
1.43

Tables:   1

The End!