Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012977.1 Corchorus capsularis cultivar CVL-1 contig12998, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26258

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1489--1563
30
2.5
31
82
6
100
12
30
30
26
1.92
4388--4496
33
3.3
33
97
0
209
44
18
11
25
1.84
4388--4529
66
2.2
66
84
2
187
42
19
11
27
1.85
4486--4573
33
2.7
32
83
11
99
39
20
10
29
1.85
4522--4626
33
3.2
33
79
2
113
43
20
10
25
1.83
7848--7900
21
2.6
21
87
3
72
7
33
32
26
1.84
13787--13835
21
2.3
21
82
6
55
14
28
16
40
1.87
15120--15162
12
3.6
12
80
0
50
20
32
34
11
1.89
15135--15220
42
2.0
42
88
0
127
23
41
26
8
1.82
21711--21753
21
2.0
21
82
8
52
34
25
18
20
1.96
24740--24775
19
1.9
18
88
5
54
33
25
0
41
1.55

Tables:   1

The End!