Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012978.1 Corchorus capsularis cultivar CVL-1 contig12999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31436

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1384--1431
2
25.5
2
83
12
66
47
0
0
52
1.00
4072--4107
16
2.4
15
90
9
56
66
5
0
27
1.13
4126--4478
114
3.1
114
84
5
471
23
24
22
29
1.99
4389--4560
83
2.1
83
87
3
249
23
23
19
33
1.97
6167--6229
33
1.9
33
93
0
108
9
25
44
20
1.82
6172--6310
33
4.2
32
80
8
102
10
28
41
20
1.84
6290--6331
21
2.0
21
90
0
66
16
30
30
21
1.95
11653--11686
17
2.1
16
94
5
59
14
0
5
79
0.91
12725--12831
33
3.3
31
77
7
106
10
29
40
19
1.85
12811--12852
21
2.0
21
95
0
75
16
33
30
19
1.94
13483--13519
12
3.1
12
88
0
56
16
35
35
13
1.88
15130--15241
33
3.4
32
88
2
152
22
40
25
11
1.88
16091--16119
12
2.3
13
94
5
51
13
0
0
86
0.58
19830--19863
11
3.2
10
84
15
50
50
17
2
29
1.61
22466--22523
22
2.7
21
86
5
62
20
20
15
43
1.88
22474--22523
22
2.3
21
93
3
82
20
20
18
42
1.90
22474--22533
22
2.8
22
87
7
79
21
18
16
43
1.88
27486--27528
21
2.0
22
90
4
70
16
18
44
20
1.87
30764--30812
21
2.3
21
82
6
55
40
16
28
14
1.87

Tables:   1

The End!