Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012980.1 Corchorus capsularis cultivar CVL-1 contig13001, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8648
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Found at i:1267 original size:40 final size:40

Alignment explanation


    Indices: 1212--1291  Score: 151
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       1202 TTAGTCTATT

                                            *       
       1212 TTCAAGATCCTATTTTCTTTTCTATCTTATTGGTTAGAGA
          1 TTCAAGATCCTATTTTCTTTTCTATCTTATTGATTAGAGA

                                                    
       1252 TTCAAGATCCTATTTTCTTTTCTATCTTATTGATTAGAGA
          1 TTCAAGATCCTATTTTCTTTTCTATCTTATTGATTAGAGA

       1292 CAAATTTTTC


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  40   39  1.00

ACGTcount: A:0.24, C:0.15, G:0.11, T:0.50


Consensus pattern (40 bp):   
TTCAAGATCCTATTTTCTTTTCTATCTTATTGATTAGAGA
Done.