Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012989.1 Corchorus capsularis cultivar CVL-1 contig13010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48353

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9970--10013
22
2.0
21
86
4
61
47
0
22
29
1.51
13593--13643
17
2.9
18
77
11
61
72
5
9
11
1.27
13611--13660
22
2.2
22
85
3
64
72
6
8
14
1.27
13624--13666
22
1.9
23
95
4
79
69
4
9
16
1.31
18247--18295
21
2.3
21
89
6
73
12
28
28
30
1.93
26222--26262
21
2.0
21
95
0
73
56
14
7
21
1.63
28260--28297
20
1.9
19
89
5
58
73
5
2
18
1.14
29602--29659
29
2.0
30
93
6
102
20
20
17
41
1.90
33820--33869
20
2.5
20
80
0
55
78
4
8
10
1.09
39046--39107
30
2.1
30
100
0
124
19
22
22
35
1.96
43871--43923
21
2.6
21
87
3
72
28
32
32
7
1.85
46798--46839
21
2.0
21
90
0
66
45
26
9
19
1.80

Tables:   1

The End!