Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012990.1 Corchorus capsularis cultivar CVL-1 contig13011, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8263

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4564--5088
38
15.6
36
65
24
174
33
19
17
29
1.95
4564--4669
37
2.9
38
83
10
148
33
20
16
28
1.95
4671--4766
37
2.6
37
83
4
124
33
18
18
29
1.95
4746--4790
22
2.0
24
86
8
67
33
17
13
35
1.89
4574--5062
98
5.0
98
92
1
786
33
19
17
30
1.95
4806--4927
60
2.0
62
88
3
185
33
19
15
31
1.93
4768--5096
136
2.4
137
80
8
361
33
18
17
30
1.94
4942--4986
22
2.0
24
86
8
67
33
17
11
37
1.85
5126--5174
16
2.9
17
80
17
66
26
22
4
46
1.69
5185--5487
143
2.1
142
85
4
405
19
30
18
32
1.96
5185--5446
48
5.5
48
89
1
393
20
30
18
31
1.96
5185--5482
95
3.1
93
86
4
393
19
30
18
31
1.96
5457--5563
47
2.3
47
85
3
144
21
23
20
34
1.97
5588--6010
33
13.2
32
65
19
161
24
25
14
34
1.94
5658--5869
28
7.0
28
65
16
93
24
25
15
34
1.94
5658--5871
61
3.5
61
85
3
297
23
25
15
35
1.94
5798--6041
96
2.6
95
90
3
359
24
25
14
36
1.93
5954--6029
33
2.3
34
81
2
82
23
22
19
34
1.97
7092--7133
21
2.0
21
90
0
66
45
26
7
21
1.77
7704--7742
19
2.1
19
95
0
69
38
17
10
33
1.84

Tables:   1

The End!