Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012991.1 Corchorus capsularis cultivar CVL-1 contig13012, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91946

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1616--2094
125
3.8
125
85
4
608
26
24
13
35
1.92
1632--2104
62
7.6
62
79
7
474
26
24
13
35
1.92
14512--14564
21
2.6
21
84
3
63
24
32
33
9
1.87
19640--19781
50
2.8
50
94
2
239
36
13
28
21
1.91
26327--26408
33
2.5
34
84
7
98
43
20
7
28
1.78
30016--30044
13
2.1
14
93
6
51
20
20
10
48
1.79
34047--34093
18
2.7
18
87
9
62
53
4
42
0
1.20
34671--34746
37
2.1
37
89
0
116
28
22
27
21
1.99
35324--35378
26
2.1
26
82
0
65
30
23
9
36
1.86
39671--39718
16
3.1
15
79
8
51
47
33
12
6
1.66
42451--42567
39
3.0
39
80
3
146
41
27
10
21
1.85
44218--44273
27
2.1
27
96
0
103
39
37
16
7
1.76
46516--46705
35
5.4
35
82
2
211
24
33
15
26
1.95
47063--47409
72
4.8
72
91
2
522
19
29
19
31
1.97
48540--48577
20
1.9
20
88
0
58
31
18
34
15
1.92
52797--52843
25
1.9
24
83
12
60
72
0
19
8
1.10
52794--52844
27
1.9
26
84
11
68
72
0
19
7
1.08
57510--57621
39
2.9
39
79
9
138
42
26
11
18
1.85
59034--59077
23
1.9
23
95
0
79
29
22
9
38
1.85
59735--59774
22
1.9
21
90
10
64
57
0
0
42
0.98
75452--75563
56
2.0
56
100
0
224
35
30
12
21
1.90
89834--89874
20
2.1
20
86
4
57
43
4
9
41
1.59

Tables:   1

The End!