Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01012992.1 Corchorus capsularis cultivar CVL-1 contig13013, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35163
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--75 Score: 150
Period size: 2 Copynumber: 37.5 Consensus size: 2
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
43 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
76 ATATCTAGCA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:3572 original size:63 final size:63
Alignment explanation
Indices: 3494--3620 Score: 245
Period size: 63 Copynumber: 2.0 Consensus size: 63
3484 AGTATAATAA
*
3494 TCCTAAGACAGAAGAAATTTATCACCCTCCAGCTAACAGGTAACTAGTATTGTATGGTAAGAC
1 TCCTAAGACAGAAGAAATTTATCACCCTCCAGCTAACAGATAACTAGTATTGTATGGTAAGAC
3557 TCCTAAGACAGAAGAAATTTATCACCCTCCAGCTAACAGATAACTAGTATTGTATGGTAAGAC
1 TCCTAAGACAGAAGAAATTTATCACCCTCCAGCTAACAGATAACTAGTATTGTATGGTAAGAC
3620 T
1 T
3621 TCTTACTTCA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (63 bp):
TCCTAAGACAGAAGAAATTTATCACCCTCCAGCTAACAGATAACTAGTATTGTATGGTAAGAC
Found at i:5197 original size:1 final size:1
Alignment explanation
Indices: 5191--5217 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
5181 CTAAGCTTTA
5191 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
5218 GCCTACATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:5756 original size:133 final size:133
Alignment explanation
Indices: 5517--5785 Score: 502
Period size: 133 Copynumber: 2.0 Consensus size: 133
5507 ATATAAAAAA
5517 ATAGTATAATTAATTCAAGTGCATAATTTCTACATCAAATGAAAAATATTACAATGATTCTCTAA
1 ATAGTATAATTAATTCAAGTGCATAATTTCTACATCAAATGAAAAATATTACAATGATTCTCTAA
* * *
5582 GAGTTTTCATGACTTGAAATCGTTGCAAAATGTTTTCACTATCAATACTATAAAACACATTTTTT
66 GAGTTTTCATAACTTGAAATCGTTACAAAATGTTTTCACTATCAATACTACAAAACACATTTTTT
5647 TCT
131 TCT
5650 ATAGTATAATTAATTCAAGTGCATAATTTCTACATCAAATGAAAAATATTACAATGATTCTCTAA
1 ATAGTATAATTAATTCAAGTGCATAATTTCTACATCAAATGAAAAATATTACAATGATTCTCTAA
*
5715 GAGTTTTCATAACTTGAAATCGTTACAAAATGTTTTTACTATCAATACTACAAAACACATTTTTT
66 GAGTTTTCATAACTTGAAATCGTTACAAAATGTTTTCACTATCAATACTACAAAACACATTTTTT
5780 TCT
131 TCT
5783 ATA
1 ATA
5786 TATGTAACCA
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 132 1.00
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.38
Consensus pattern (133 bp):
ATAGTATAATTAATTCAAGTGCATAATTTCTACATCAAATGAAAAATATTACAATGATTCTCTAA
GAGTTTTCATAACTTGAAATCGTTACAAAATGTTTTCACTATCAATACTACAAAACACATTTTTT
TCT
Found at i:6973 original size:20 final size:21
Alignment explanation
Indices: 6948--6986 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
6938 TTTAGAAGCA
6948 ATTAATTAAAAA-CATTAAAC
1 ATTAATTAAAAACCATTAAAC
6968 ATTAATTAAAAACCATTAA
1 ATTAATTAAAAACCATTAA
6987 GGAAGGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (21 bp):
ATTAATTAAAAACCATTAAAC
Found at i:7079 original size:74 final size:74
Alignment explanation
Indices: 6993--7149 Score: 280
Period size: 74 Copynumber: 2.1 Consensus size: 74
6983 TTAAGGAAGG
* *
6993 GAAATGTGTAATTACGAAAAAGGGTAGAAGGAAAAGGAATGGGGGAAACTCATAGAGGGGCTTTT
1 GAAAAGTGTAATTACGAAAAAGGGTAGAAGGAAAAGGAATAGGGGAAACTCATAGAGGGGCTTTT
7058 TAGTCATCC-
66 TAGTCA-CCT
7067 GAAAAGTGTAATTACGAAAAAGGGTAGAAGGAAAAGGAATAGGGGAAACTCATAGAGGGGCTTTT
1 GAAAAGTGTAATTACGAAAAAGGGTAGAAGGAAAAGGAATAGGGGAAACTCATAGAGGGGCTTTT
7132 TAGTCACCT
66 TAGTCACCT
7141 GAAAAGTGT
1 GAAAAGTGT
7150 GAAAAGACCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
73 2 0.03
74 78 0.98
ACGTcount: A:0.39, C:0.09, G:0.31, T:0.21
Consensus pattern (74 bp):
GAAAAGTGTAATTACGAAAAAGGGTAGAAGGAAAAGGAATAGGGGAAACTCATAGAGGGGCTTTT
TAGTCACCT
Found at i:10035 original size:30 final size:30
Alignment explanation
Indices: 10001--10057 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
9991 GTTCTTTTTC
*
10001 CTTGAAATCTTTCTTCAATG-ATCTTCATAA
1 CTTGAAAT-TATCTTCAATGAATCTTCATAA
10031 CTTGAAATTATCTTCAATGAATCTTCA
1 CTTGAAATTATCTTCAATGAATCTTCA
10058 ATCACAAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (30 bp):
CTTGAAATTATCTTCAATGAATCTTCATAA
Found at i:12548 original size:18 final size:18
Alignment explanation
Indices: 12484--12548 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
12474 AATGGATCGA
12484 ATGGCCGGTTGTGGCCGG
1 ATGGCCGGTTGTGGCCGG
*
12502 ATGGCGCATGCGTTG-GCCCGTGCG
1 ATGGC-C--G-GTTGTGGCC--G-G
12526 ATGGCCGGTTGTGGCCGG
1 ATGGCCGGTTGTGGCCGG
12544 ATGGC
1 ATGGC
12549 TTGTGCGATG
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
18 11 0.30
19 2 0.05
20 4 0.11
21 8 0.22
22 4 0.11
23 2 0.05
24 6 0.16
ACGTcount: A:0.08, C:0.25, G:0.46, T:0.22
Consensus pattern (18 bp):
ATGGCCGGTTGTGGCCGG
Found at i:16349 original size:21 final size:21
Alignment explanation
Indices: 16316--16364 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
16306 ATGATGCACC
* * * *
16316 TGGGCACATAAGCCAAGTGCT
1 TGGGCGCACAAGCCAAATGCA
16337 TGGGCGCACAAGCCAAATGCA
1 TGGGCGCACAAGCCAAATGCA
16358 TGGGCGC
1 TGGGCGC
16365 CAGGAGGAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.33, T:0.14
Consensus pattern (21 bp):
TGGGCGCACAAGCCAAATGCA
Found at i:17679 original size:2 final size:2
Alignment explanation
Indices: 17672--17704 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
17662 ATCAGGATAC
17672 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
17705 CGAGTACATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21292 original size:6 final size:6
Alignment explanation
Indices: 21276--21306 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
21266 CTAAGCAAAG
21276 TAAAT- TAAATC TAAATC TAAATC TAAATC TA
1 TAAATC TAAATC TAAATC TAAATC TAAATC TA
21307 TAGCAATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (6 bp):
TAAATC
Found at i:25780 original size:33 final size:33
Alignment explanation
Indices: 25730--25922 Score: 205
Period size: 33 Copynumber: 5.7 Consensus size: 33
25720 CCGCGCAACA
25730 CCGGCCACAAGACCGGCCACGCGACATGGACATGT
1 CCGGCCAC-A-ACCGGCCACGCGACATGGACATGT
25765 CCGGCCATC-ACCGGCCACGCGACATGGACATGT
1 CCGGCCA-CAACCGGCCACGCGACATGGACATGT
* **
25798 CCGGCTACAACCGGCCAAACGAC-TCGGCCAACATGT
1 CCGGCCACAACCGGCCACGCGACAT-GG---ACATGT
25834 CCGGCCATC-ACCGGCCACGCGACATGGACATGT
1 CCGGCCA-CAACCGGCCACGCGACATGGACATGT
* ** * *
25867 CCGGCTACAACCGGCCAAACGAC-TCGGCCATGC
1 CCGGCCACAACCGGCCACGCGACAT-GGACATGT
25900 CCGGCCACAACCGGCCACGCGAC
1 CCGGCCACAACCGGCCACGCGAC
25923 CCTTTGTCTA
Statistics
Matches: 134, Mismatches: 14, Indels: 22
0.79 0.08 0.13
Matches are distributed among these distances:
32 4 0.03
33 94 0.70
35 7 0.05
36 27 0.20
37 2 0.01
ACGTcount: A:0.24, C:0.41, G:0.26, T:0.09
Consensus pattern (33 bp):
CCGGCCACAACCGGCCACGCGACATGGACATGT
Found at i:25840 original size:69 final size:67
Alignment explanation
Indices: 25759--25922 Score: 278
Period size: 69 Copynumber: 2.4 Consensus size: 67
25749 CGCGACATGG
25759 ACATGTCCGGCCATCACCGGCCACGCGACATGGACATGTCCGGCTACAACCGGCCAAACGACTCG
1 ACATGTCCGGCCATCACCGGCCACGCGACATGGACATGTCCGGCTACAACCGGCCAAACGACTCG
25824 GCC
66 G-C
25827 AACATGTCCGGCCATCACCGGCCACGCGACATGGACATGTCCGGCTACAACCGGCCAAACGACTC
1 -ACATGTCCGGCCATCACCGGCCACGCGACATGGACATGTCCGGCTACAACCGGCCAAACGACTC
25892 GGC
65 GGC
*
25895 -CATGCCCGGCCA-CAACCGGCCACGCGAC
1 ACATGTCCGGCCATC-ACCGGCCACGCGAC
25923 CCTTTGTCTA
Statistics
Matches: 93, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
65 1 0.01
66 25 0.27
68 1 0.01
69 66 0.71
ACGTcount: A:0.24, C:0.41, G:0.25, T:0.10
Consensus pattern (67 bp):
ACATGTCCGGCCATCACCGGCCACGCGACATGGACATGTCCGGCTACAACCGGCCAAACGACTCG
GC
Found at i:26838 original size:8 final size:8
Alignment explanation
Indices: 26825--26858 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
26815 CACCTTCTTG
26825 AAAAATTC
1 AAAAATTC
26833 AAAAATTC
1 AAAAATTC
*
26841 AGAAACTTC
1 A-AAAATTC
26850 AAAAATTC
1 AAAAATTC
26858 A
1 A
26859 TAGCTGATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.59, C:0.15, G:0.03, T:0.24
Consensus pattern (8 bp):
AAAAATTC
Found at i:26944 original size:10 final size:9
Alignment explanation
Indices: 26931--26965 Score: 52
Period size: 10 Copynumber: 3.7 Consensus size: 9
26921 AGTTATATCG
26931 AAAAATATAA
1 AAAAATA-AA
26941 AAAAATAAA
1 AAAAATAAA
26950 ATAAAATAAA
1 A-AAAATAAA
26960 AAAAAT
1 AAAAAT
26966 TTCGACCAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (9 bp):
AAAAATAAA
Found at i:29127 original size:33 final size:33
Alignment explanation
Indices: 29032--29133 Score: 138
Period size: 33 Copynumber: 3.2 Consensus size: 33
29022 ATCAGATTTA
* *
29032 TTTTCAATGC--T-ATCAACCAAAACAGGATTA
1 TTTTCAATGCTATGATCAACCAAAACAGAATTG
*
29062 TTTGCAATGCTATGATCAACCAAAACAGAATTG
1 TTTTCAATGCTATGATCAACCAAAACAGAATTG
* *
29095 TTTTTAATGCTATGTTCAACCAAAACAGAATTG
1 TTTTCAATGCTATGATCAACCAAAACAGAATTG
29128 TTTTCA
1 TTTTCA
29134 TCACAATTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
30 9 0.15
32 1 0.02
33 52 0.84
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (33 bp):
TTTTCAATGCTATGATCAACCAAAACAGAATTG
Found at i:29194 original size:33 final size:33
Alignment explanation
Indices: 29157--29277 Score: 127
Period size: 33 Copynumber: 3.7 Consensus size: 33
29147 CCAAAACAGA
* * *
29157 TTTAGTTTTATTGCAAACAACACTCAAGTTAGG
1 TTTAGTATCATTGCAAACAACACTCAAATTAGG
* ** *
29190 TTTAGTATCATCGCAAACAACA-TCTAAAACAGA
1 TTTAGTATCATTGCAAACAACACTC-AAATTAGG
* *
29223 TTTAGTGTCATTGCAAACAACACTCAATTTAGG
1 TTTAGTATCATTGCAAACAACACTCAAATTAGG
**
29256 TTTAGTATCACCGCAAACAACA
1 TTTAGTATCATTGCAAACAACA
29278 TCTAAAAGAC
Statistics
Matches: 70, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
32 2 0.03
33 66 0.94
34 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (33 bp):
TTTAGTATCATTGCAAACAACACTCAAATTAGG
Found at i:29201 original size:66 final size:66
Alignment explanation
Indices: 29144--29284 Score: 210
Period size: 66 Copynumber: 2.1 Consensus size: 66
29134 TCACAATTAG
* * *
29144 CATCCAAAACAGATTTAGTTTTATTGCAAACAACACTCAAGTTAGGTTTAGTATCATCGCAAACA
1 CATCCAAAACAGATTTAGTGTCATTGCAAACAACACTCAAGTTAGGTTTAGTATCATCACAAACA
29209 A
66 A
* * * *
29210 CATCTAAAACAGATTTAGTGTCATTGCAAACAACACTCAATTTAGGTTTAGTATCACCGCAAACA
1 CATCCAAAACAGATTTAGTGTCATTGCAAACAACACTCAAGTTAGGTTTAGTATCATCACAAACA
29275 A
66 A
*
29276 CATCTAAAA
1 CATCCAAAA
29285 GACTCTTTTC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 70 1.00
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (66 bp):
CATCCAAAACAGATTTAGTGTCATTGCAAACAACACTCAAGTTAGGTTTAGTATCATCACAAACA
A
Found at i:30793 original size:8 final size:8
Alignment explanation
Indices: 30765--30798 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
30755 GAATCGGCTA
30765 TGAATTTT
1 TGAATTTT
*
30773 TGAAGTTTC
1 TGAA-TTTT
30782 TGAATTTT
1 TGAATTTT
30790 TGAATTTT
1 TGAATTTT
30798 T
1 T
30799 CAAGAAGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.59
Consensus pattern (8 bp):
TGAATTTT
Found at i:32648 original size:33 final size:33
Alignment explanation
Indices: 32598--32715 Score: 121
Period size: 33 Copynumber: 3.6 Consensus size: 33
32588 TTTCAGATGC
*
32598 TGTTTGCGATGATACTAAACCTAAATTGAGTGT
1 TGTTTGCAATGATACTAAACCTAAATTGAGTGT
* * ** *
32631 TGTTTGCAATGACACTAAATCT-GTTTTAGATGT
1 TGTTTGCAATGATACTAAACCTAAATTGAG-TGT
* * *
32664 TGTTTGCGATGATACTAAACCTAACTTGAGTGG
1 TGTTTGCAATGATACTAAACCTAAATTGAGTGT
* *
32697 TGTTTGCAATAAAACTAAA
1 TGTTTGCAATGATACTAAA
32716 TCTGTTTTGG
Statistics
Matches: 67, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
32 4 0.06
33 59 0.88
34 4 0.06
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.36
Consensus pattern (33 bp):
TGTTTGCAATGATACTAAACCTAAATTGAGTGT
Found at i:32701 original size:66 final size:66
Alignment explanation
Indices: 32592--32730 Score: 224
Period size: 66 Copynumber: 2.1 Consensus size: 66
32582 AGAGTCTTTC
* * *
32592 AGATGCTGTTTGCGATGATACTAAACCTAAATTGAGTGTTGTTTGCAATGACACTAAATCTGTTT
1 AGATGCTGTTTGCGATGATACTAAACCTAAATTGAGTGGTGTTTGCAATAAAACTAAATCTGTTT
32657 T
66 T
* *
32658 AGATGTTGTTTGCGATGATACTAAACCTAACTTGAGTGGTGTTTGCAATAAAACTAAATCTGTTT
1 AGATGCTGTTTGCGATGATACTAAACCTAAATTGAGTGGTGTTTGCAATAAAACTAAATCTGTTT
32723 T
66 T
*
32724 GGATGCT
1 AGATGCT
32731 AATTGTGATG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (66 bp):
AGATGCTGTTTGCGATGATACTAAACCTAAATTGAGTGGTGTTTGCAATAAAACTAAATCTGTTT
T
Found at i:32778 original size:33 final size:33
Alignment explanation
Indices: 32741--32828 Score: 122
Period size: 33 Copynumber: 2.7 Consensus size: 33
32731 AATTGTGATG
32741 AAAACAATTCTGTTTTGGTTGAACATAGCATTA
1 AAAACAATTCTGTTTTGGTTGAACATAGCATTA
** *
32774 AAAACAATTCTGTTTTGGTTGATTATAGCATTG
1 AAAACAATTCTGTTTTGGTTGAACATAGCATTA
* * *
32807 CAAATAATCCTGTTTTGGTTGA
1 AAAACAATTCTGTTTTGGTTGA
32829 TAGCATTGAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 49 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (33 bp):
AAAACAATTCTGTTTTGGTTGAACATAGCATTA
Found at i:32834 original size:30 final size:31
Alignment explanation
Indices: 32739--32843 Score: 113
Period size: 33 Copynumber: 3.3 Consensus size: 31
32729 CTAATTGTGA
* *
32739 TGAAAACAATTCTGTTTTGGTTGAACATAGCAT
1 TGAAAATAATCCTGTTTTGGTTG-A-ATAGCAT
* * *
32772 TAAAAACAATTCTGTTTTGGTTGATTATAGCAT
1 TGAAAATAATCCTGTTTTGGTTGA--ATAGCAT
*
32805 TGCAAATAATCCTGTTTTGGTTG-ATAGCAT
1 TGAAAATAATCCTGTTTTGGTTGAATAGCAT
32835 TGAAAATAA
1 TGAAAATAA
32844 ATCTGATTCA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
30 15 0.23
32 1 0.02
33 48 0.75
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.38
Consensus pattern (31 bp):
TGAAAATAATCCTGTTTTGGTTGAATAGCAT
Done.