Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012994.1 Corchorus capsularis cultivar CVL-1 contig13015, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2030
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.39


Found at i:1942 original size:152 final size:152

Alignment explanation


    Indices: 1666--1967  Score: 595
    Period size: 152  Copynumber: 2.0  Consensus size: 152

       1656 GTTATTCTTA

                                                                             
       1666 ATGTTTTGTTCTTTATAATTCTTAAACCATCAAGGCAAAGACTTATTTTGAATAAAAGGGATTTA
          1 ATGTTTTGTTCTTTATAATTCTTAAACCATCAAGGCAAAGACTTATTTTGAATAAAAGGGATTTA

                                                                             
       1731 TTCAGGAATCGTTAGTAACGAGTTAATATATTTTGTATGATTTGGGGGTTAAGGATTTGTTAGTA
         66 TTCAGGAATCGTTAGTAACGAGTTAATATATTTTGTATGATTTGGGGGTTAAGGATTTGTTAGTA

                                  
       1796 CGTTTCTTCCTAGGCTAATTGT
        131 CGTTTCTTCCTAGGCTAATTGT

                                          *                                  
       1818 ATGTTTTGTTCTTTATAATTCTTAAACCATGAAGGCAAAGACTTATTTTGAATAAAAGGGATTTA
          1 ATGTTTTGTTCTTTATAATTCTTAAACCATCAAGGCAAAGACTTATTTTGAATAAAAGGGATTTA

                                                                             
       1883 TTCAGGAATCGTTAGTAACGAGTTAATATATTTTGTATGATTTGGGGGTTAAGGATTTGTTAGTA
         66 TTCAGGAATCGTTAGTAACGAGTTAATATATTTTGTATGATTTGGGGGTTAAGGATTTGTTAGTA

                                
       1948 CGTTTCTTCCTAGGCTAATT
        131 CGTTTCTTCCTAGGCTAATT

       1968 ATTCGATAGA


Statistics
Matches: 149,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 152  149  1.00

ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41


Consensus pattern (152 bp):   
ATGTTTTGTTCTTTATAATTCTTAAACCATCAAGGCAAAGACTTATTTTGAATAAAAGGGATTTA
TTCAGGAATCGTTAGTAACGAGTTAATATATTTTGTATGATTTGGGGGTTAAGGATTTGTTAGTA
CGTTTCTTCCTAGGCTAATTGT
Done.