Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012997.1 Corchorus capsularis cultivar CVL-1 contig13018, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76132

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9314--9344
12
2.5
13
89
10
55
38
16
19
25
1.92
10409--10438
3
10.3
3
92
7
53
33
36
0
30
1.58
18905--18935
14
2.2
14
100
0
62
22
35
0
41
1.54
19029--19058
7
4.3
7
95
0
51
0
0
50
50
1.00
24093--24416
161
2.0
161
100
0
648
39
9
17
33
1.83
27524--27639
55
2.1
56
95
1
207
17
29
29
24
1.97
28812--28875
27
2.3
28
79
10
69
57
3
12
26
1.50
29205--29229
13
1.9
13
100
0
50
24
8
8
60
1.52
32932--33058
60
2.1
60
88
0
182
37
14
14
33
1.87
35641--35731
32
2.8
32
88
0
137
40
13
16
29
1.86
36281--36314
16
2.1
16
100
0
68
47
11
0
41
1.40
38011--38053
11
3.9
11
90
0
68
46
6
4
41
1.51
38007--38053
22
2.1
22
96
0
85
46
6
4
42
1.48
39979--40003
1
25.0
1
100
0
50
0
0
0
100
0.00
57144--57299
59
2.6
60
81
5
190
37
17
16
28
1.91
64228--64278
24
2.1
25
85
3
68
29
5
0
64
1.17
64348--64413
29
2.2
29
84
10
80
19
18
13
48
1.81
64370--64459
31
3.0
28
80
13
83
25
13
16
44
1.84
64705--64739
17
2.1
17
94
5
63
0
0
11
88
0.51
65400--65566
31
5.4
31
88
1
190
19
22
25
31
1.98
65400--65572
94
1.8
94
82
0
220
19
22
25
32
1.97
68768--68803
2
18.0
2
100
0
72
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72437--72538
33
3.1
33
83
9
113
20
41
27
10
1.86
72514--72619
32
3.3
32
88
2
142
11
36
37
14
1.82

Tables:   1

The End!