Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012998.1 Corchorus capsularis cultivar CVL-1 contig13019, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19881

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1335--1381
15
3.2
14
80
14
51
46
2
0
51
1.13
1626--1664
20
2.0
20
85
10
53
28
5
2
64
1.28
4458--4654
22
8.9
22
73
8
100
37
10
16
36
1.83
4490--5006
44
11.9
44
66
17
122
37
9
16
35
1.81
4458--4654
68
3.0
66
82
5
227
37
10
16
36
1.83
4659--5072
22
18.7
22
69
17
153
39
9
15
35
1.81
4903--5004
43
2.4
43
82
11
120
41
9
12
36
1.77
4924--5074
65
2.3
65
81
8
164
41
11
12
35
1.79
5172--5396
22
10.1
22
71
9
143
37
10
16
35
1.83
5172--5499
22
14.9
22
68
12
138
39
10
15
34
1.81
5461--5508
22
2.2
22
88
7
71
50
10
14
25
1.74
5885--5932
3
16.0
3
100
0
96
66
0
33
0
0.92
15717--15759
22
2.0
22
100
0
86
32
6
9
51
1.61
15739--15859
62
2.0
62
96
1
226
27
7
13
52
1.67
15766--15862
33
3.1
33
66
11
94
26
8
16
48
1.74
18819--19002
29
6.3
29
75
3
156
20
21
30
27
1.98
18829--19002
87
2.0
87
86
0
240
20
21
31
27
1.98
18853--19037
87
2.1
87
82
3
228
22
21
29
25
1.99
19073--19175
29
3.6
29
81
5
127
18
31
24
26
1.98
19296--19433
28
5.0
28
82
4
163
17
23
25
34
1.96

Tables:   1

The End!