genome.fa.s12999.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012999.1 Corchorus capsularis cultivar CVL-1 contig13020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67930

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1786--1924	73	1.9	73	92	0	233	20	14	24	40	1.90
2323--2397	29	2.6	29	86	0	96	14	29	28	28	1.95
2516--2581	27	2.4	28	82	12	91	16	22	27	33	1.96
2516--2590	28	2.7	26	76	17	80	16	22	28	33	1.95
3388--3427	14	3.1	14	79	20	59	30	30	0	40	1.57
3400--3425	11	2.4	11	100	0	52	26	30	0	42	1.56
3768--3830	31	2.0	31	93	0	108	20	9	34	34	1.85
4317--4458	71	2.0	71	97	0	266	26	14	14	43	1.85
5922--5968	24	2.0	24	86	0	67	55	10	19	14	1.68
11412--11436	13	1.9	13	100	0	50	12	32	8	48	1.69
11773--11802	2	15.0	2	100	0	60	50	0	0	50	1.00
15902--15993	46	2.0	46	91	2	150	42	13	21	22	1.87
20213--20317	16	6.6	16	64	17	58	15	10	36	38	1.82
20213--20317	32	3.3	32	85	4	133	15	10	36	38	1.82
20456--20494	20	2.0	20	85	10	53	35	5	2	56	1.35
20514--20601	31	2.8	32	74	11	83	9	9	30	51	1.65
20514--20604	15	5.6	17	70	16	52	8	9	31	49	1.67
21479--21503	13	1.9	13	100	0	50	32	8	20	40	1.81
21553--21644	33	2.8	33	93	0	148	14	32	35	17	1.90
21560--21661	33	3.1	31	82	9	114	11	34	35	18	1.87
21732--21763	10	3.2	10	100	0	64	40	0	0	59	0.97
21960--22038	29	2.5	32	80	8	92	29	0	11	59	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21940--22018	13	5.9	13	75	15	54	27	0	12	59	1.34
22439--22478	2	20.0	2	84	0	53	42	0	0	57	0.98
25466--25707	41	5.8	41	76	9	240	39	26	10	23	1.87
25448--25710	84	3.1	82	86	8	343	37	26	10	24	1.88
25466--25704	83	2.9	84	89	5	351	39	26	10	23	1.87
27985--28022	17	2.2	18	90	4	60	18	13	0	68	1.21
41394--41431	2	18.5	2	89	5	58	47	2	2	47	1.30
44352--44397	16	2.9	15	84	12	65	41	41	15	2	1.59
44338--44407	6	11.8	6	70	29	53	32	48	17	1	1.56
45159--45213	23	2.4	23	84	6	76	27	47	23	1	1.62
45161--45212	17	3.1	17	86	5	61	25	50	23	1	1.60
45202--45291	16	5.8	16	85	10	132	40	38	14	6	1.72
45202--45291	15	5.8	15	87	6	126	40	38	14	6	1.72
45159--45213	6	9.5	6	80	7	60	27	47	23	1	1.62
45200--45305	47	2.3	47	86	0	158	36	41	16	5	1.72
47533--47634	51	2.0	51	98	0	195	25	16	25	32	1.96
54637--54680	19	2.4	19	88	3	63	18	6	18	56	1.62
55360--55404	18	2.3	20	85	7	58	53	2	0	44	1.13
55773--55806	2	17.0	2	100	0	68	50	50	0	0	1.00
55967--56008	20	2.1	20	100	0	84	45	35	9	9	1.69
61427--61491	21	3.2	20	67	16	53	41	6	6	46	1.54

Tables:   1

The End!