Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013006.1 Corchorus capsularis cultivar CVL-1 contig13027, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7272
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:848 original size:14 final size:15

Alignment explanation


    Indices: 823--855  Score: 59
    Period size: 14  Copynumber: 2.3  Consensus size: 15

        813 AGTGTCGGTT

                           
        823 TTTGACACTATAAAG
          1 TTTGACACTATAAAG

                           
        838 TTTGA-ACTATAAAG
          1 TTTGACACTATAAAG

                
        852 TTTG
          1 TTTG

        856 GCTAAGGTTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  14   13  0.72
  15    5  0.28

ACGTcount: A:0.36, C:0.09, G:0.15, T:0.39


Consensus pattern (15 bp):   
TTTGACACTATAAAG

Found at i:1801 original size:16 final size:16

Alignment explanation


    Indices: 1782--1816  Score: 61
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1772 TTCGGGCGGA

                    *       
       1782 TTCGGGTATTTTCGGG
          1 TTCGGGTAATTTCGGG

                            
       1798 TTCGGGTAATTTCGGG
          1 TTCGGGTAATTTCGGG

               
       1814 TTC
          1 TTC

       1817 AGGTTCGGGG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.09, C:0.14, G:0.34, T:0.43


Consensus pattern (16 bp):   
TTCGGGTAATTTCGGG
Done.