Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013008.1 Corchorus capsularis cultivar CVL-1 contig13029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20084

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
125--230
23
4.4
23
77
11
122
45
11
9
33
1.72
3066--3240
75
2.3
74
76
7
174
32
14
14
38
1.87
3189--3341
75
2.0
75
79
2
164
30
18
17
33
1.94
5420--5460
12
3.6
12
83
6
50
2
9
2
85
0.78
8036--8064
3
9.7
3
100
0
58
68
0
0
31
0.89
8579--8640
26
2.3
27
75
8
65
61
12
11
14
1.57
14134--14212
36
2.2
36
83
0
104
25
16
36
21
1.94
14278--14331
9
6.0
9
88
0
81
14
20
40
24
1.90
14278--14331
18
3.0
18
94
0
90
14
20
40
24
1.90
17999--18023
13
1.9
13
100
0
50
0
36
0
64
0.94

Tables:   1

The End!