Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013014.1 Corchorus capsularis cultivar CVL-1 contig13035, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24473

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
817--853
6
6.3
6
96
3
67
51
13
0
35
1.41
2591--2653
30
2.1
30
90
0
99
53
9
14
22
1.69
2706--2767
21
2.9
21
90
2
88
50
3
20
25
1.64
2679--2767
22
4.2
22
80
4
94
48
3
22
25
1.66
2813--2934
22
6.0
21
75
13
103
50
4
20
25
1.66
2879--2913
17
2.1
17
88
0
52
65
5
5
22
1.36
2981--3048
10
7.2
9
70
20
50
60
1
23
14
1.43
3090--3318
27
8.7
25
72
21
125
52
3
23
19
1.62
3138--3175
19
2.0
19
94
0
67
60
0
23
15
1.35
3111--3203
46
2.0
49
87
8
140
55
2
23
18
1.53
3157--3299
55
2.5
56
80
11
150
52
4
23
20
1.64
3157--3319
26
5.9
26
73
16
123
53
4
22
19
1.63
11956--12189
22
10.7
22
69
15
119
16
18
6
58
1.59
12501--12588
29
3.1
29
63
21
78
22
19
6
51
1.70
12490--12649
48
3.2
48
80
12
196
24
19
6
50
1.71
12421--12649
55
4.3
55
84
7
292
25
18
6
50
1.70
14866--14890
3
8.3
3
100
0
50
32
0
0
68
0.90
15013--15059
24
2.0
24
95
0
85
53
10
0
36
1.36
19780--19840
30
2.0
31
96
3
115
18
22
9
49
1.77

Tables:   1

The End!