genome.fa.s13016.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013016.1 Corchorus capsularis cultivar CVL-1 contig13037, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123481

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870--903	7	4.7	7	89	7	50	67	2	14	14	1.34
876--907	15	2.2	14	94	5	55	62	0	21	15	1.32
891--979	22	4.2	22	80	4	94	49	3	23	23	1.65
998--1040	14	3.0	14	86	3	50	60	4	18	16	1.52
1021--1052	16	1.9	17	93	6	57	68	0	18	12	1.20
1058--1163	22	5.1	21	78	13	94	52	3	18	24	1.62
1108--1142	17	2.1	17	88	0	52	65	5	5	22	1.36
1172--1255	39	2.2	37	79	8	98	57	2	25	15	1.51
1224--1282	27	2.1	28	93	3	102	57	3	22	16	1.54
1230--1303	38	2.0	37	84	7	96	59	4	21	14	1.52
1283--1548	27	9.7	26	69	17	146	53	3	24	19	1.61
1377--1418	10	4.2	10	78	9	50	59	0	28	11	1.33
1377--1413	19	1.9	19	94	0	65	62	0	24	13	1.31
1417--1548	26	4.9	27	77	9	137	52	4	21	21	1.65
4873--4900	12	2.3	12	100	0	56	0	17	32	50	1.47
15280--15332	6	9.0	6	87	8	74	84	15	0	0	0.61
32973--33068	32	3.0	32	92	3	149	14	31	37	16	1.89
38470--38500	1	31.0	1	100	0	62	100	0	0	0	0.00
42073--42240	22	7.7	22	70	6	101	34	13	10	41	1.78
42470--42508	13	2.9	13	82	17	53	46	0	0	53	1.00
42476--42508	15	2.4	14	90	10	50	48	0	0	51	1.00
44023--44088	31	2.1	31	88	0	96	51	4	16	27	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45142--45617	166	2.9	165	81	4	535	29	15	16	38	1.90
45691--45723	12	2.8	12	86	13	50	39	3	0	57	1.14
51217--51278	31	2.0	31	100	0	124	32	3	19	45	1.66
66354--66381	6	4.7	6	100	0	56	17	17	46	17	1.85
66882--66912	2	15.5	2	93	0	53	51	0	0	48	1.00
67064--67089	13	2.0	13	100	0	52	61	7	15	15	1.55
78788--78843	27	2.1	27	89	0	85	33	5	10	50	1.60
82349--82384	18	2.1	18	89	5	56	2	25	0	72	0.98
85976--86017	21	2.0	21	100	0	84	47	14	9	28	1.75
91255--91316	31	2.1	31	82	8	76	38	8	14	38	1.76
91483--91510	2	14.0	2	100	0	56	50	0	0	50	1.00
97226--97268	21	2.0	22	90	4	70	37	20	4	37	1.74
101769--101812	23	1.9	23	81	9	54	15	0	56	27	1.40
107083--107660	35	16.3	35	86	3	773	39	9	17	33	1.81
110898--110936	9	4.3	9	83	0	51	53	0	2	43	1.14

Tables:   1

The End!