Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013017.1 Corchorus capsularis cultivar CVL-1 contig13038, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5147
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30


Found at i:3379 original size:33 final size:33

Alignment explanation


    Indices: 3333--3417  Score: 107
    Period size: 33  Copynumber: 2.6  Consensus size: 33

       3323 GGCGCGAGTG

                    *                        
       3333 ACCGGCCATGCGACTTGGAGAAGCCCGGCCAAC
          1 ACCGGCCACGCGACTTGGAGAAGCCCGGCCAAC

                 *         *     *         * 
       3366 ACCGGTCACGCGACTCGGAGATGCCCGGCCATC
          1 ACCGGCCACGCGACTTGGAGAAGCCCGGCCAAC

              *           *    
       3399 ACTGGCCACGCGACATGGA
          1 ACCGGCCACGCGACTTGGA

       3418 CATGTCCGAC


Statistics
Matches: 43,  Mismatches: 9, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  33   43  1.00

ACGTcount: A:0.22, C:0.36, G:0.31, T:0.11


Consensus pattern (33 bp):   
ACCGGCCACGCGACTTGGAGAAGCCCGGCCAAC
Done.