Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013018.1 Corchorus capsularis cultivar CVL-1 contig13039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5440
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30


Found at i:5007 original size:6 final size:6

Alignment explanation


    Indices: 4996--5022  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       4986 AAAGCAAAGC

                                           
       4996 AAATCT AAATCT AAATCT AAATCT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAA

       5023 ACAGATTAAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30


Consensus pattern (6 bp):   
AAATCT

Found at i:5043 original size:13 final size:13

Alignment explanation


    Indices: 5027--5053  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       5017 TCTAAAACAG

                         
       5027 ATTAATAAAGCAA
          1 ATTAATAAAGCAA

                         
       5040 ATTAATAAAGCAA
          1 ATTAATAAAGCAA

             
       5053 A
          1 A

       5054 CAATAATTAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22


Consensus pattern (13 bp):   
ATTAATAAAGCAA
Done.