Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013031.1 Corchorus capsularis cultivar CVL-1 contig13052, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15605

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--736
198
3.7
198
83
5
937
33
12
18
35
1.89
1799--1873
29
2.6
29
100
0
150
30
2
2
64
1.21
2738--3012
109
2.5
109
92
4
446
48
1
11
38
1.50
4612--4636
13
1.9
13
100
0
50
40
8
8
44
1.63
6664--6761
22
4.4
22
76
7
99
38
10
15
35
1.81
6835--6877
22
2.0
22
86
9
61
41
9
18
30
1.82
6969--7223
22
11.6
22
73
12
161
43
10
12
33
1.77
6969--7107
68
2.1
64
82
12
158
41
10
13
33
1.79
7030--7223
88
2.2
88
81
4
223
44
9
11
34
1.73
7304--7351
19
2.5
19
86
10
62
47
10
14
27
1.76
7304--7880
22
26.7
21
67
16
168
39
10
14
35
1.81
7345--7636
44
6.7
44
74
9
197
40
9
14
35
1.79
7304--7636
66
5.2
63
75
11
209
41
9
15
34
1.79
7533--7634
23
4.5
23
79
8
102
38
8
13
39
1.76
13353--13716
195
1.9
195
97
0
692
33
19
16
30
1.94

Tables:   1

The End!