Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013034.1 Corchorus capsularis cultivar CVL-1 contig13055, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79891

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11476--11537
30
2.1
29
88
5
90
45
16
6
32
1.72
12021--12693
337
2.0
340
90
4
1054
50
6
8
34
1.58
17491--17546
21
2.7
21
70
13
53
57
10
17
14
1.65
18444--19009
22
26.0
21
66
15
127
36
15
9
39
1.80
18575--18660
45
1.9
45
85
4
120
38
15
11
34
1.83
18734--18813
23
3.5
23
81
1
90
40
13
7
38
1.73
18995--19061
19
3.5
19
91
2
107
23
20
11
43
1.85
19167--19411
22
11.3
22
70
14
134
34
13
9
42
1.78
19142--19292
44
3.4
43
77
8
126
33
12
10
43
1.77
19299--19337
21
2.0
19
85
14
53
41
7
5
46
1.55
19167--19527
22
16.3
22
67
18
112
35
14
9
39
1.80
19591--19753
22
7.3
22
81
8
84
39
18
10
31
1.84
19645--19729
22
3.9
22
92
0
134
35
15
14
35
1.87
19645--19752
22
4.9
22
87
2
101
36
16
12
34
1.87
22433--22491
20
3.0
20
92
0
100
55
6
0
37
1.26
22427--22484
20
2.8
22
89
7
79
58
6
0
34
1.25
23177--23224
18
2.7
18
81
12
55
64
0
4
31
1.12
23885--24047
22
7.5
21
73
13
100
36
10
14
39
1.80
23944--24082
44
3.2
43
79
10
147
37
10
15
37
1.81
23899--24112
66
3.2
65
79
7
173
35
10
15
38
1.82
27770--27794
11
2.3
11
100
0
50
76
0
8
16
1.02
36504--36574
35
2.0
35
94
0
124
30
19
19
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47231--47261
13
2.4
13
100
0
62
25
6
0
67
1.14
47336--47411
21
3.5
21
89
7
116
60
10
2
26
1.43
47328--47400
23
3.3
23
90
7
123
58
8
2
30
1.41
47328--47411
44
1.9
44
95
0
150
59
9
2
28
1.41
47882--47911
15
1.9
16
93
6
53
6
16
0
76
0.99
52670--52703
12
2.8
12
86
0
50
17
55
0
26
1.42
58641--58695
26
2.1
26
89
0
83
34
20
5
40
1.75
58781--58815
16
2.2
16
94
0
61
11
22
17
48
1.79
59564--59684
63
1.9
64
94
1
217
16
20
19
43
1.88
68473--68511
2
19.5
2
94
0
69
53
0
46
0
1.00
68835--68899
18
3.8
18
76
12
64
18
6
26
49
1.71
70238--70265
2
14.0
2
100
0
56
50
0
0
50
1.00
72165--72216
26
2.0
26
85
10
72
55
1
5
36
1.35
73393--73443
2
26.0
2
82
4
59
49
3
1
45
1.32
74231--74271
21
1.9
22
85
5
57
29
7
21
41
1.80
77530--77555
11
2.4
11
100
0
52
88
0
11
0
0.52

Tables:   1

The End!