Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013035.1 Corchorus capsularis cultivar CVL-1 contig13056, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30638

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5279--5336
29
2.0
29
93
3
100
32
6
6
53
1.54
9381--9410
2
15.0
2
100
0
60
50
0
50
0
1.00
14416--14650
32
7.4
32
84
2
287
22
19
15
42
1.89
14411--14650
63
3.8
64
85
1
297
23
19
15
42
1.89
14416--14677
95
2.8
93
80
4
301
22
19
17
40
1.91
15957--16095
69
2.0
69
91
0
224
43
14
20
22
1.87
17153--17243
40
2.3
40
88
0
128
36
14
10
38
1.81
17189--17243
16
3.4
16
76
0
65
38
14
9
38
1.78
22557--22618
24
2.5
25
89
7
99
45
4
35
14
1.66
25897--25962
31
2.2
31
81
5
82
30
24
10
34
1.89
25911--25987
31
2.5
30
82
4
91
27
18
16
37
1.92
26972--27055
31
2.7
30
74
3
78
35
9
27
27
1.88
29295--29353
18
3.2
18
73
9
57
45
0
1
52
1.10
29290--29352
22
2.8
22
80
7
65
46
0
1
52
1.10

Tables:   1

The End!