Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013036.1 Corchorus capsularis cultivar CVL-1 contig13057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20639

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--34
2
17.0
2
100
0
68
50
0
0
50
1.00
2299--2343
21
2.1
21
84
8
56
35
4
6
53
1.47
2939--3095
73
2.1
74
90
2
244
21
27
9
42
1.83
4882--4915
2
17.5
2
93
6
61
50
0
0
50
1.00
8777--8846
30
2.3
31
87
2
97
28
20
20
31
1.97
8897--8941
23
2.0
23
90
0
72
26
15
24
33
1.95
16017--16063
21
2.3
20
85
7
60
14
12
17
55
1.70
16331--16396
31
2.1
32
88
5
100
28
18
4
48
1.67
16536--16920
22
17.6
22
69
9
171
38
10
14
36
1.81
16536--16920
44
8.8
44
71
12
211
38
10
14
36
1.81
16638--16695
23
2.5
23
91
5
91
41
6
10
41
1.66
16791--16879
45
2.0
45
82
8
110
33
10
15
40
1.81
17058--17141
44
1.9
44
80
9
100
41
10
14
33
1.80
17185--17278
40
2.3
40
98
0
179
45
10
10
32
1.73
17213--17358
62
2.3
61
81
6
186
43
8
10
37
1.70

Tables:   1

The End!