Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013037.1 Corchorus capsularis cultivar CVL-1 contig13058, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48041

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1603--1634
5
6.4
5
100
0
64
59
40
0
0
0.97
4901--4928
14
2.0
14
100
0
56
28
14
14
42
1.84
5846--5880
14
2.5
14
85
0
52
0
8
14
77
0.99
6752--6789
11
3.5
11
85
10
51
57
2
0
39
1.12
7101--7150
13
3.7
14
76
7
50
32
14
2
52
1.53
15332--15370
2
18.0
2
85
15
51
46
5
2
46
1.38
15332--15370
7
6.0
6
88
11
51
46
5
2
46
1.38
17813--17854
22
1.9
22
100
0
84
61
4
14
19
1.49
18147--18190
1
44.0
1
81
0
52
90
2
2
4
0.58
18152--18191
21
2.0
20
90
5
62
90
0
2
7
0.55
26002--26035
6
5.7
6
92
0
59
14
82
0
2
0.79
31239--31403
89
1.9
89
100
0
330
31
16
10
41
1.82
36967--37019
21
2.7
19
86
11
79
50
24
5
18
1.68
39730--39766
2
18.5
2
100
0
74
0
51
0
48
1.00
45047--45108
31
2.0
31
84
3
81
46
3
16
33
1.63
45870--45947
29
2.7
29
79
2
75
35
11
6
46
1.66
46962--47201
108
2.3
107
84
6
312
41
9
7
41
1.66

Tables:   1

The End!