Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013038.1 Corchorus capsularis cultivar CVL-1 contig13059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9732
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:2018 original size:13 final size:14

Alignment explanation


    Indices: 2002--2033  Score: 50
    Period size: 13  Copynumber: 2.4  Consensus size: 14

       1992 TGAAAACAGA

                          
       2002 GAGAAGAAA-CAAT
          1 GAGAAGAAATCAAT

                          
       2015 GAGAAGAAATCAAT
          1 GAGAAGAAATCAAT

                  
       2029 G-GAAG
          1 GAGAAG

       2034 GGGATGTAAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  13   13  0.72
  14    5  0.28

ACGTcount: A:0.56, C:0.06, G:0.28, T:0.09


Consensus pattern (14 bp):   
GAGAAGAAATCAAT
Done.