Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013039.1 Corchorus capsularis cultivar CVL-1 contig13060, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45753

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1978--2037
29
2.0
30
87
9
88
20
25
15
40
1.90
2480--2544
32
2.0
32
100
0
130
30
9
12
47
1.72
4239--4278
20
2.0
20
100
0
80
25
0
30
45
1.54
10330--10377
24
2.0
24
91
0
78
45
8
37
8
1.64
11612--11679
35
1.9
35
100
0
136
35
8
14
41
1.77
11837--11901
17
3.6
17
80
11
85
4
18
47
29
1.68
11910--11960
15
3.3
15
76
10
57
17
9
37
35
1.83
11891--11967
32
2.4
32
95
0
136
12
10
38
37
1.78
11891--11977
32
2.7
31
85
3
111
11
10
39
39
1.76
12115--12178
16
4.0
16
83
0
83
4
12
32
50
1.61
12242--12271
15
1.9
16
93
6
53
6
13
33
46
1.69
12468--12492
6
4.2
6
100
0
50
16
16
0
68
1.22
23185--23250
33
2.0
33
100
0
132
33
9
27
30
1.88
28887--28963
32
2.4
32
88
0
118
41
15
15
27
1.87
30967--30991
11
2.3
11
100
0
50
32
32
0
36
1.58
33609--33750
31
4.5
31
83
1
185
30
24
24
19
1.98
44474--44543
34
2.1
34
94
0
122
30
20
18
31
1.96

Tables:   1

The End!