Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001304.1 Corchorus capsularis cultivar CVL-1 contig01304, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 647

Length: 1079
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:50 original size:16 final size:16

Alignment explanation


    Indices: 29--72  Score: 88
    Period size: 16  Copynumber: 2.8  Consensus size: 16

         19 TTGTGCAACG

                            
         29 GGTTCAGTCTTGAACA
          1 GGTTCAGTCTTGAACA

                            
         45 GGTTCAGTCTTGAACA
          1 GGTTCAGTCTTGAACA

                        
         61 GGTTCAGTCTTG
          1 GGTTCAGTCTTG

         73 GCCTCCATCA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   28  1.00

ACGTcount: A:0.20, C:0.18, G:0.27, T:0.34


Consensus pattern (16 bp):   
GGTTCAGTCTTGAACA
Done.