Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013042.1 Corchorus capsularis cultivar CVL-1 contig13063, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57004

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
838--862
4
6.2
4
100
0
50
76
0
24
0
0.80
3157--3247
44
2.1
44
93
0
155
25
17
13
43
1.85
5339--5485
74
2.0
74
94
0
258
19
29
10
40
1.85
5499--5537
20
1.9
21
94
5
71
30
0
10
58
1.31
13449--13953
35
14.8
33
81
9
497
33
18
9
38
1.83
13449--13947
106
4.9
103
81
9
563
33
18
9
38
1.84
13766--13852
27
3.1
27
90
5
129
34
18
8
39
1.80
13727--13916
92
2.0
93
88
7
285
34
16
8
40
1.80
14570--14612
20
2.2
20
86
0
59
2
23
0
74
0.93
15462--15497
19
1.9
18
94
5
63
11
27
2
58
1.46
20060--20095
18
2.0
18
94
0
63
16
13
30
38
1.88
20422--20954
156
3.4
154
81
7
558
34
19
14
31
1.92
22024--22051
2
14.0
2
100
0
56
50
0
0
50
1.00
22605--22677
31
2.3
31
86
6
94
24
12
24
38
1.90
24259--24374
60
1.9
60
98
0
223
37
4
19
38
1.72
24300--24355
24
2.3
24
87
0
85
35
3
21
39
1.71
24580--24618
3
13.0
3
100
0
78
66
0
0
33
0.92
27295--27567
141
1.9
141
90
1
440
34
20
16
29
1.94
53146--53189
12
3.7
12
78
0
52
72
0
0
27
0.85
53155--53184
14
2.1
15
93
6
53
76
0
0
23
0.78
53546--53580
11
3.2
11
91
0
61
80
17
2
0
0.84
56764--56799
18
2.0
18
94
0
63
75
2
11
11
1.16

Tables:   1

The End!