Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013043.1 Corchorus capsularis cultivar CVL-1 contig13064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31510

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
197--233
18
2.1
19
90
10
60
56
0
2
40
1.13
3436--3489
27
2.0
27
92
0
90
14
24
22
38
1.91
4996--5021
12
2.2
12
100
0
52
53
23
7
15
1.67
11583--11620
3
12.7
3
100
0
76
34
0
0
65
0.93
12950--13023
37
2.0
37
97
0
139
40
21
17
20
1.91
13487--13640
76
2.0
76
100
0
308
31
11
18
38
1.87
20861--20967
3
35.7
3
82
3
81
6
36
3
53
1.45
20866--20921
21
2.7
21
100
0
112
10
33
0
55
1.35
20863--20967
21
4.9
21
79
6
102
6
36
3
53
1.45
21800--21862
21
3.1
21
86
9
94
44
7
15
31
1.76
24511--24623
56
2.1
55
91
3
183
46
19
11
22
1.81
24966--25014
2
26.5
2
76
15
52
44
0
0
55
0.99
24968--25015
16
3.1
16
87
3
71
45
0
0
54
0.99
25457--25549
46
2.0
46
97
0
177
27
18
2
51
1.57
27713--27821
49
2.2
49
91
1
173
56
8
10
24
1.59
28083--28108
2
13.0
2
100
0
52
50
0
0
50
1.00
28856--29137
49
5.7
49
82
6
327
30
14
30
24
1.95
28856--29178
99
3.3
99
83
5
347
29
14
30
24
1.95

Tables:   1

The End!